BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491707 Length=638 Score E Sequences producing significant alignments: (Bits) Value AT4G30450.1 | Symbols: | glycine-rich protein | chr4:14886027-... 894 0.0 > AT4G30450.1 | Symbols: | glycine-rich protein | chr4:14886027-14886675 REVERSE LENGTH=649 Length=649 Score = 894 bits (484), Expect = 0.0 Identities = 596/648 (92%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 1 CTAATCAAGTTACACTATAAACTCAAATACATCGATCGGCAAGTCTTAACACACGAAGAT 60 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 3 CTAATCAAGTTACACTATAAACTCAAACACATCTATCGGCAAGTCTTAACACACGAAGAT 62 Query 61 TTCCAAAATGGCTAGGGCCCAAGGTCTTTTTCTTCTTGGTTTATTAGTTATTTCAAGTTT 120 |||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 63 TTCCAAAATGGCTAAGGCCGAAGGTCTTTTTCTTCTTGGTTTAGTAGTTATTTCAAGTTT 122 Query 121 AGTTATGTTAACCGAGAGCCGAGTCGCAAGAAAAGACTTGGGGCTTGACCTAGGTGGGAT 180 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 123 AGTTATGTTAACCGAGAGCCGACTCGCAAGAAAAGACTTGGGGATTGACCTAGGTGGGAT 182 Query 181 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 242 Query 241 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCTAGCTCGTCATC 300 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 243 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCCAGCTCATCATC 302 Query 301 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCTGGTTCATTTGCTGG 360 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 303 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCCGGTTCATTTGCTGG 362 Query 361 ATCTAAAGCTGGATCAGGATCTGGTAACTAAATTATAATATGCAGTTAATTTTCTACTTA 420 |||| |||||||||||||||||||||||||||||||||| | ||| ||||| ||||| Sbjct 363 CTCTAGAGCTGGATCAGGATCTGGTAACTAAATTATAATA---A-TTACTTTTCGACTTA 418 Query 421 AAGTGTGAAACTATAAGTATGTTGTATGTTGTTGGTTTGTCGTAATTAGTATCGTATGTA 480 ||||||||||| ||||||||||| |||||| |||||| |||||| ||| ||||||||||| Sbjct 419 AAGTGTGAAACAATAAGTATGTTTTATGTTTTTGGTTCGTCGTAGTTAATATCGTATGTA 478 Query 481 CGAAATTGGA-TGAATAAACTGTCGCCATAAGTTATGTTTTATTTGAG----TGTGT--A 533 || ||| ||| ||||||| ||| || ||||||||||||| |||||| ||||| | Sbjct 479 CGGAAT-GGAATGAATAATTTGTTACCGTAAGTTATGTTTTGTTTGAGCGAGTGTGTGTA 537 Query 534 CCTAGCTTACTCTCTCAATTCAAGTATTTTGCCAAAAGTAGAATCTCTTTAGATTTGGAT 593 |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct 538 CCTAGCTTACTCTCTCTATTCAAGTCTTTCACCAAAAGTAGAATCTCTTTAGATTTGGAA 597 Query 594 CAGAGCATGTTCAATCAATCGTAAATT---GGTAATTTGAATTTGAGA 638 |||| |||||| || ||||||||||| ||||||| |||||||||| Sbjct 598 CAGAACATGTTTGATTAATCGTAAATTATTGGTAATTCGAATTTGAGA 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30793532111 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5