BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491759
Length=3026
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29950.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 4283 0.0
> AT4G29950.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr4:14657045-14660573 FORWARD LENGTH=3109
Length=3109
Score = 4283 bits (2319), Expect = 0.0
Identities = 2579/2703 (95%), Gaps = 24/2703 (1%)
Strand=Plus/Plus
Query 340 AAGCTTATGGTTCCATCGGAGATAGAAAT-TCTGGGAGACGAATCTGATCGTCGTTTCGC 398
||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||
Sbjct 414 AAGCTTATGGTTCCATCGGAGATAG-AATCTCTAGGAGACGAATCTGATCGTCGTTTCGC 472
Query 399 CAATCTGAGAGGTGTGCGGTGGCGCGTGAATCTCGGTGTTCTTCCGTTTCAGTCTTCTTC 458
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CAATCTGAGAGGTCTGCGATGGCGCGTGAATCTCGGTGTTCTTCCGTTTCAGTCTTCTTC 532
Query 459 TATCGATGATCTTCGCAAAGCAACAGCTGAATCTCGCAGAAGATATGCTGCTTTAAGAAG 518
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 533 CATCGATGATCTTCGTAAAGCTACAGCTGAATCTCGCAGAAGATATGCTGCTTTAAGAAG 592
Query 519 ACGGCTCTTGATAGATCCACATTTGTCTAAAGATGTTCGAAATTCCCCTGATCTCTCTAT 578
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACGGCTCTTGATTGATCCACATTTGTCTAAAGATGTTCGAAATTCCCCTGATCTCTCTAT 652
Query 579 CGACAATCCCTTATCACAAAACCCAGATAGTACATGGGGTCGATTCTTTCGTAACGCAGA 638
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 653 CGACAATCCCTTATCACAAAACCCTGATAGTACATGGGGTCGGTTCTTCCGTAACGCAGA 712
Query 639 GCTAGAGAAAACATTGGATCAAGACTTGTCTAGGTTATATCCAGAGCATTGGACTTACTT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 713 GCTAGAGAAAACATTGGATCAAGACTTGTCTAGGTTATATCCAGAGCATTGGAGTTACTT 772
Query 699 TCAAGCTCCTGGATGTCAAGGCATGTTAAGACGTATTTTACTCTTGTGGTGCCTTAAACA 758
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 773 TCAAGCTCCTGGATGTCAAGGCATGTTAAGGCGTATTCTACTCTTGTGGTGCCTTAAACA 832
Query 759 TCCCGAGTACGGTTATCGACAAGGAATGCATGAGCTTTTGGCGCCTCTGCTTTATGTACT 818
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 833 TCCCGAGTACGGTTATCGACAAGGGATGCATGAGCTTTTGGCGCCACTGCTTTATGTACT 892
Query 819 TCATGTTGATGTCGATCGTCTCTCTGAAGTGCGTAAAAGTTATGAAGATCATTTCATAGA 878
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TCATGTTGATGTTGATCGTCTCTCTGAAGTGCGTAAAAGTTATGAAGATCATTTCATAGA 952
Query 879 CAGATTTGATGGTTTATCTTTCGAAGAAAGAGATATTACTTACAACTTTGAGTTCAAAAA 938
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 953 CAGATTCGATGGTTTATCTTTTGAAGAAAGAGATATTACTTACAACTTTGAATTCAAAAA 1012
Query 939 GTTTCTGGAGGATTTCACAGACGATGAGATTGGTGGTATTCAGGGGAACTCaaaaaaaaT 998
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 1013 GTTTCTGGAGGATTTCACGGATGATGAGATTGGTGGTATTCAGGGGAATTCAAAGAAAAT 1072
Query 999 AAAGAGTCTAGATGAGCTCGATCCCGAAATCCAGTCTATTGTGAGGTTAAGTGATGCTTA 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AAAGAGTCTAGATGAGCTCGATCCCGAAATCCAGTCTATTGTGAGGTTAAGTGATGCTTA 1132
Query 1059 TGGAGCCGAAGGTGAACTCGGGATTGTCTTGTCCGAGAAATTCATGGAGCATGATGCTTA 1118
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGGAGCTGAAGGTGAACTCGGGATTGTCTTGTCCGAGAAATTCATGGAGCATGATGCTTA 1192
Query 1119 CTGCATGTTTGATGCTCTAATGAATGGAGCTCATGGTTGTGTTGCAATGGCTGGATTTTT 1178
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1193 CTGCATGTTTGATGCTCTAATGAATGGAGTTCATGGTTGTGTTGCAATGGCTGGATTTTT 1252
Query 1179 CT-CTTACTCTCCAGCTAGCGGATCCCATACGGGTTTACCTCCTGTTCTTGAAGCTTCCA 1237
| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1253 -TGCTTACTCTCCAGCTAGCGGATCCCACACGGGTTTACCTCCCGTTCTTGAAGCTTCCA 1311
Query 1238 CTGCGTTTTACCATCTTTTATCGTTCGTTGATTCGTCCCTGCATAGTCATTTAGTAGAAC 1297
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 1312 CTGCGTTTTACCATCTTTTATCATTCGTTGATTCGTCTCTCCATAGTCATTTAGTAGAAC 1371
Query 1298 TCGGAGTTGAACCTCAGTACTTTGGGCTTCGTTGGTTACGAGTTTTGTTTGGAAGAGAGT 1357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1372 TCGGAGTTGAACCTCAGTACTTTGGGCTTCGCTGGTTACGAGTTTTGTTTGGAAGAGAGT 1431
Query 1358 TTTTGCTTCAGGATTTATTGATAGTGTGGGATGAGATATTCTCAGCAGATAATACGACGA 1417
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1432 TTTTGCTTCAGGATTTATTGATAGTGTGGGATGAGATATTCTCAGCAGATAACACGACGA 1491
Query 1418 GAACAGATGAGGATAACAATAGAAACCAGAGCTACAAGATCTTTGATTCTCCTCGGGGAG 1477
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1492 GAACAGATGCGGATAACAATACAAACCAGAGCTACAAGATCTTTGATTCTCCTCGGGGAG 1551
Query 1478 CTCTAATCTCGGGAATGGCAGTTTCGATGATATTATGTTTAAGATCATCATTGCTTGCTA 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CTCTAATCTCGGGAATGGCAGTTTCGATGATATTATGTTTAAGATCATCATTGCTTGCTA 1611
Query 1538 CTGAAAATGCAGCTTCTTGTCTTCAGAGACTATTGAATTTCCCAGAGAAGATTGATGTGA 1597
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1612 CTGAAAACGCAGCTTCTTGTCTCCAGAGACTATTGAATTTCCCAGAGAAGATTGATGTGA 1671
Query 1598 GGAAGATAATAGAGAAAGCTAAGTCATTACAAACTTTGGCGTTGGATGATGATGTACGAT 1657
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1672 GGAAGATAATAGAGAAAGCTAAGTCATTACAAACTTTGGCTTTGGATGATGATGTACGAT 1731
Query 1658 CATCCGCTCTGTCGATAAACGATGGCTTTGATCAGAGCATCAGTCCACCAGTACCGGCGA 1717
|||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1732 CATCAGCTCTATCGATAAATGATGGCTTTGATCAGAGCATCAGTCCAGCAGTACCGGCGA 1791
Query 1718 GAACTAACAGTTTTCCTTCGGGATCTACTTCTCCTAAATCTCCATTGATAATTACACCAC 1777
||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 1792 GAACTAACAGTTTTCCTTCCGGATCCACATCTCCTAAATCTCCATTGATAATTACCCCAC 1851
Query 1778 AAAGCTATTGGGAGGATCAATGGAGAGTTCTACACAAAGCCGCCGAGGAAAAGAAACAGA 1837
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1852 AAAGTTATTGGGAGGATCAATGGAGAGTTCTACACAAAGCCGCCGAGGAAGAGAAAAAGA 1911
Query 1838 GTCCTTCTCCAATACAGAAGAAAAAGCCTTGGTTCAGGGTGAAAAGACTTTTCAGAACAG 1897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1912 GTCCTTCTCCAATACAGAAGAAAAAGCCTTGGTTCAGGGTGAAAAGACTTTTCAGAGCAG 1971
Query 1898 AGTCTGAGCCAACTCAGAGCGCCAAATCATCAAATGGGAAAAGTGAAGTCAAGGTATCAT 1957
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1972 AGTCTGAGCCAACTCATAGCGCCAAGTCACCAAATGGGAAAAGTGAAGTCAAGATATCAT 2031
Query 1958 CAGTTGCTCGTAACTTGCTTGAAGATTTTAATCGGCAGCTTATTTCTGAACCTGAGGAAG 2017
||||||| || |||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2032 CAGTTGCGCGAAACTTGCTTGAAGATTTTAATCGGCAGCTTGTTTCTGAACCTGTGGAAG 2091
Query 2018 CTAATCCAATAGATGTTGTGAACAATGAAGATAGCTCAATTCGAGAAACCGAGGATATAA 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 CTAATCCAATAGATGTTGTGAACAATGAAGATAGCTCAATTCGAGAAACCGAGGATATAA 2151
Query 2078 ACACTGATTTTGAAACAGCTGCTGAAGAGAGTATAGTAATGGAGGAGAATTCATCTGATG 2137
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2152 ACACGGATTTTGAAACTGCTGCTGAAGAGAGTATAGTAATGGAGGAGAATTCTTCTGATC 2211
Query 2138 TTTTCTCAGATCCAAACAGTCCTCTCAGAGGCTCAAACTACATTGAGAATGATTCGGATA 2197
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2212 TTTTCTCAGATCCAAACAGTCCTCTCAGAGACTCAAACTACATTGAGAATGATTCGGATA 2271
Query 2198 GCAGTAACGAGTCAAATCTATTTCCCGATGAAACAGTTAAAGATCAAGAAACAAGCGTAG 2257
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 2272 GCAGTAACGAGTCAAATCTATTTCCTGATGAAACAGTTAAAGATCGAGAAACAAGCGTAG 2331
Query 2258 TAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCATGGAGTTTATAGTATCTGTATCCA 2317
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 2332 TAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCATGGAGTTTATAGTATCTCTGTCTA 2391
Query 2318 AAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCATTTCTTCTCAACCGAGCATCG 2377
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2392 AAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCGTTTCTTCTCAACCGAGCATCG 2451
Query 2378 AGTTTCCAGTAACTCAGTCCAATGATGAAGACGATGCTGCAGATAAATCTGTGGCCATTA 2437
||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||
Sbjct 2452 AGTTTCCAGTAACTCAGTCTAATGATGAAGACAACGCTGCAGATAAATCTGTGGCCAATA 2511
Query 2438 TCAAGGAGCGTAGTAAGGTTGTACCAGGAAAATTCCAGTGGTTTTGGAAGTTTGGACGCA 2497
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2512 TCAAGGAGCGTAGTAAGGTTTTACCAGGAAAATTCCAGTGGTTTTGGAAGTTTGGACGCA 2571
Query 2498 ATATCGCTGCTGAGGAGACGAGATGTAATGGTGTCGAAAGTAGTAAGAGCGATTTAGTTT 2557
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2572 ATGTCACTGCTGAGGAGACGAGATGTAATGGAGTCGAAAGTAGTAAGAGCGATTTAGTTT 2631
Query 2558 ACTCTTCCGAGTCACATTCTCTTCCACAGGCTTCATCTTCGAGCAGCAAAGGAGACACAG 2617
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2632 GCTCTTCTGAGTCACATTCTCTTCCACAGGCTTCATCTTCGGGCAGCAAAGGAGACACAG 2691
Query 2618 ACCAGAATGTGATGAATACTCTGAAAAACCTTGGCAATTCGATGCTCGAACACATTCAGG 2677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2692 ACCAGAATGTGATGAATACTCTGAAAAACCTTGGCAATTCGATGCTCGAACACATTCAGG 2751
Query 2678 TGATCGAGTCAGTTTTCCAGCAAGAACGAGGTCAGGTTCAGGCAGGATTAATGGAGAACT 2737
|||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
Sbjct 2752 TGATAGAGTCAGTTTTCCAGCAAGAACGAGGTCAGGTTCAGGCAGGACTAATTGAGAATT 2811
Query 2738 TATCTAAGACCAATTTGGTCGAAAAGGGACAAGTCACAGCCATGACAGCTCTCAAGGAGC 2797
||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2812 TATCTAAGAACAATTTGGTCGAAAAGGGACAAGTCACAGCCATGACTGCTCTGAAGGAGC 2871
Query 2798 TTCGTAAAATTAGTAATCTTTTGTTGGAAATGTGATGGACCCTTTGATTCTTCTTGTTCT 2857
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2872 TTCGAAAAATTAGTAATCTTTTGTTGGAAATGTGATGGACCCTTTGATTCTTCTTGTTCT 2931
Query 2858 GCTCTGTGtatatatatatatatatatatatttttttGTAAAGTATTGTTTCTTTAGAGC 2917
||||| ||||||||||||||||| || || ||||| ||||||||||||| |||||||||
Sbjct 2932 GCTCTCTGTATATATATATATATCTA-AT-TTTTT--GTAAAGTATTGTT-CTTTAGAGC 2986
Query 2918 ACGGAATAAAAATAAAGGAAAAGTTTTTCTCGA-C-CT--C--T---G-T-C-GA--TAC 2963
|| |||||||| ||| ||||| ||||| || || | || | | | | | || |||
Sbjct 2987 ACAGAATAAAATTAA-GGAAACGTTTTCCTTGATCTCTGTCGATTTTGCTGCAGAAATAC 3045
Query 2964 CAAAACTTTTTGGTTTTGTGATCATGTTTAAGATGTTATCAATAAAGATGCCTAAGTTCT 3023
|||||||||||||||| | | |||||| ||||||||||||||||||||| ||||||| ||
Sbjct 3046 CAAAACTTTTTGGTTTAGCGGTCATGTGTAAGATGTTATCAATAAAGATACCTAAGTCCT 3105
Query 3024 GAG 3026
|||
Sbjct 3106 GAG 3108
Score = 396 bits (214), Expect = 8e-109
Identities = 299/336 (89%), Gaps = 22/336 (7%)
Strand=Plus/Plus
Query 1 CACTTTGCTCCGACAGGTCA-C-CTT-AGTTTTTGCTTTTCTCACGAAACAAACAAACTT 57
|||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||
Sbjct 11 CACTTTGCTCCGACAGGTCACCACTTAAG-TTTTGCTTTTCTCACGAAACAAACAAACTT 69
Query 58 GCTATTTTCTTCTCTTTTTCCAGACCATGAGAG-GAAAAATAATTGAGCTCCTTCTGTG- 115
|||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||
Sbjct 70 GCTATTTTCTTCTCTTTTTCCAGACCATGAGAAAGCAAAATAATTGAGCTCATTCTCTGC 129
Query 116 AAAAAC--CCATCTTTAATCTCTTCCGCTTGGATTCGGAGAGAGAA-AATAAA-GA---G 168
||||| |||||||||||||||||| |||||||||||||||||| || ||| || |
Sbjct 130 AAAAAAAACCATCTTTAATCTCTTCCATTTGGATTCGGAGAGAGAATAA-AAACGAATAG 188
Query 169 A-A-TT-GATTCTCTGTCTCTCTCTCACCTATTTT-ATTGTGTTCCGATCTGATCGGATT 224
| | || |||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 189 ACAATTTGATTCTCTGTTTCTCTCTCACCTATTTTTATTGTGTTCCGATCTGATCGGATT 248
Query 225 TTATTTTCAGGTTCATTTGCGATTTAAATTTCGATTCTTTTTCTGG-TG-TC-CA-CGGA 280
| ||| |||||||||||| ||||||||||||||||||||||| | | || || || ||||
Sbjct 249 TAATTATCAGGTTCATTTTCGATTTAAATTTCGATTCTTTTTTTTGCTGGTCTCAACGGA 308
Query 281 GAAATTTCCCGGTGGCAGCTTAAAGTTTTGAttttt 316
||||||| |||||| |||||||||||||||||||||
Sbjct 309 GAAATTTTCCGGTGACAGCTTAAAGTTTTGATTTTT 344
Score = 102 bits (55), Expect = 2e-20
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 2235 TAAAGATCAAGAAACAAGCGTAGTAGATTCGCCTCTTTCCATTTCTTCTCAACCGAGCAT 2294
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 2390 TAAAGATCAAGAAACAAGCGTAGTAGATTCTCCTCTTCCCGTTTCTTCTCAACCGAGCAT 2449
Query 2295 GGAGTTT 2301
||||||
Sbjct 2450 CGAGTTT 2456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150450662057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5