BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg491767

Length=299
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29905.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   324    3e-88


> AT4G29905.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G57123.1); 
Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14626921-14627631 
REVERSE LENGTH=711
Length=711

 Score =  324 bits (175),  Expect = 3e-88
 Identities = 198/209 (95%), Gaps = 1/209 (0%)
 Strand=Plus/Plus

Query  1    ATGTGTTTGGAAGTTGTGTATCATGAAGAGAAGACGGAGCTAGGTCGGCAACAAGCACCG  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  202  ATGTGTTTGGAAGTTGTGTATCATGAAGAGAAGACGGAGCTTGGTCGGCAACAAGCACCA  261

Query  61   GGGATGTGTCCATATTGCGGCGGAAAAGTATCGGCGGTTGATATAGAGACAAAGTGGTTG  120
            ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  262  GGGATGTGTCCTTATTGCGGCGGAAAAGTATCGGCGGTGGATATAGAGACGAAGTGGTTG  321

Query  121  TTCTGTTTCTTACCACTTTGTTTCAAGGTCAAACGCAAGTACTCTTGTTCTTCCTGCGAC  180
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| 
Sbjct  322  TTCTGTTTCTTACCACTTTGTTTCAAGGTCAAACGCAAATACTCATGTTCTTCGTGCGAG  381

Query  181  CGTCGTCTCGTCTTGTATTATTGAA-AAA  208
            |||| |||||||||||||||||||| |||
Sbjct  382  CGTCATCTCGTCTTGTATTATTGAAGAAA  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13823630975


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5