BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491803
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29540.2 | Symbols: | bacterial transferase hexapeptide rep... 1888 0.0
> AT4G29540.2 | Symbols: | bacterial transferase hexapeptide repeat-containing
protein | chr4:14497729-14499933 FORWARD LENGTH=1225
Length=1225
Score = 1888 bits (1022), Expect = 0.0
Identities = 1145/1205 (95%), Gaps = 6/1205 (0%)
Strand=Plus/Plus
Query 1 ATGTATGCAATTGAAAGGGGTTTGGTTTTGGTCTACGTAGCCCGCCAATGATTTCTCTCC 60
||||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1 ATGTATGCAATTGGAAGGGGTGTGGTTTTGGTCGACGTAGCCCGCC-ATGATTTCTCTCC 59
Query 61 TTAAAGCTCGCGAGAAGcttctttctcctctcttcagtacctctatccaaagactctcct 120
|||||||||||||||||||||| ||||||||| ||||| || |||||| |||||||||||
Sbjct 60 TTAAAGCTCGCGAGAAGCTTCTCTCTCCTCTCGTCAGTTCCACTATCCGAAGACTCTCCT 119
Query 121 ctagtctctcttattctcGTGAAGATTCAAGAGATTCTGAAGTCTTAATACACCCGAGTG 180
|||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 120 CTAGCCTCTCCTATTCTCGTGAAGATTCGAGGGATTCTGAAGTCTTAATACACCCGAGTG 179
Query 181 CTGTCGTCCACCCAAACGCTGTGATTGGCAAGGGAGTGTCAGTTGGTCCATTCTGTAC-A 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 180 CTGTCGTCCACCCAAATGCTGTGATTGGCAAGGGAGTTTCAGTTGGTCCATACTGTACTA 239
Query 240 GTTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATATCTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 -TTGGCTCTTCAGTGAAGCTAGGCAATGGCTGCAAACTCTATCCTTCTAGCCATGTCTTT 298
Query 300 GGAAACACCGAGATGGGGGAATCTTGTGTACTGATGACTGGTGCTGTTGTTGGCGATGAG 359
|||||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 299 GGAAACACAGAGTTGGGGGAATCTTGTGTTCTCATGACTGGTGCTGTTGTTGGCGATGAG 358
Query 360 CTTCCTGGCTATACATTCATAGGAAGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 CTTCCTGGCTATACATTCATAGGATGCAATAACATTATCGGTCACCACGCCGTGGTTGGT 418
Query 420 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTAAATGTCAAGACTTGAAGTACAAGCATGGAGATGAATGCTTTCTTTGCATTGGTAAC 478
Query 480 AACAATGAAATTAGGGAGTTCTGTTCGATTCACAGGTCATCAAAACCCAGTGATAAAACG 539
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 479 AACAATGAAATCAGGGAGTTCTGCTCGATTCACAGGTCATCAAAGCCCAGTGATAAAACG 538
Query 540 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTTATTGGTGACAACAATCTAATCATGGGTTCTTGTCATATCGCCCATGATTGTAAGATT 598
Query 600 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCCGGCCATGTGGTTGTACAAGAC 659
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 599 GGTGACCGCAACATATTTGCCAACAATACGCTTCTTGCTGGCCATGTGGTTGTAGAAGAC 658
Query 660 AATACACACACAGCAGGAGCCACGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 AATACACACACAGCAGGAGCCTCGGTGGTCCACCAGTTCTGTCATATTGGCTCTTTTGCT 718
Query 720 TTCATTGGCGGTGGTTCTGTGGTTTCACAAGATGTTCCAAAGTACATGATGGTGACTGGA 779
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 719 TTCATTGGCGGTGGTTCTGTGGTCTCACAAGATGTTCCAAAGTACATGATGGTGGCTGGA 778
Query 780 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GAAAGAGCCGAACTTCGCGGTTTGAATCTGGAGGGACTTAGACGAAATGGATTTACCATG 838
Query 840 TCAGAGCTAAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 899
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCAGAGATGAAGAGCCTAAGAGCAGCCTATCGTAAGATATTCATGTCTACTGAAACAGTC 898
Query 900 CCCTTGAGTCTTGAAGAGCGTCTCATGAAGATGGAACAGAACCAAGAGTTGTACAGTGTT 959
|||| ||| ||||||||||||||| | || |||||||| |||||||| |||||||||||
Sbjct 899 TCCTTAAGTTTTGAAGAGCGTCTCACGGAGCTGGAACAGGACCAAGAGCTGTACAGTGTT 958
Query 960 CCTGCAGTATCGGCAATGTTGCAATCAATCCGAGATTCTTTCACAGAAAGTCGCCGTGGG 1019
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 959 CCTGCAGTATCGGCAATGTTGCAGTCAATCCGAGATTCTTTCACTGAAAGTCGCCGTGGG 1018
Query 1020 ATATGCAAGTTCAGACAATGGCTGGATTCCACAGCTTAGAGACTTAGCTTACGCATCCAT 1079
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 1019 ATATGCAAGTTCAGACAATGGCTCGATTCCACAACTTAGAGACTTAGCTTAGGCATTCAG 1078
Query 1080 TGATCAGCAATGGC--AT-ATACCTTATTGCTCAGCACCATTTCTTTCACTGGATCTGTA 1136
| |||||||||||| || |||||| |||||||| |||||||| ||||||||| |||||
Sbjct 1079 TAATCAGCAATGGCTTATTATACCTAATTGCTCAATACCATTTCCTTCACTGGAACTGTA 1138
Query 1137 ATAGTTTGATATATAGCTTTAACCAAGTGTTGTCAACATTTTGTGGGCACATAACATCCT 1196
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1139 ATAGTTTGATATATAGCTTTAACTAAGTGTTGTCAACATTCTGTGGGCACATAACATCCT 1198
Query 1197 TAAAA 1201
|||||
Sbjct 1199 TAAAA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58985640375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5