BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491837
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1674 0.0
AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein ... 678 0.0
> AT4G29190.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr4:14391938-14393373 REVERSE LENGTH=1436
Length=1436
Score = 1674 bits (906), Expect = 0.0
Identities = 1059/1132 (94%), Gaps = 13/1132 (1%)
Strand=Plus/Plus
Query 1 TTAAAGAAGATGATGATCGGAGAAACTCGCCGGACTTATCCTACTGTTGAAATACCTCCA 60
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 62 TTAAAGAAGATGATGATCGGAGAAACTCGCAGGACTTATCCCACTGTTGAAATACCTCCA 121
Query 61 TGGCCAGTTTC-TGAAGAGCTTACGGCGTCGGAGtttttttCTCCGGTGATGAATAGTCC 119
||||| | | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 122 TGGCC-GGTACTTGAAGAGCTTACAACGTCGGAGTTTTTTTCTCCGGTGATGAATAGTCC 180
Query 120 AGATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTT-CCGTCTAACGAAC 178
||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 181 AGATTGTAGCATGCTTGAAGCTTTGGCGGGGTTGCAGCGTTAT-TTGCCGTCTAACGAAC 239
Query 179 CGGATCCGGATTC-TGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACTCA 237
|||||||||| || | |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 240 CGGATCCGGAGTCAT-ACCCGGATCTATTGGGTCCGGATTCACCAATCGATGCTTACTCA 298
Query 238 TGTGACCATTTCCGTATGTACGATTTCAAAGTCCGGAGGTGTGCTCGTGGCCGGAGTCAT 297
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 TGCGACCATTTCCGTATGTACGATTTCAAAGTCAGGAGGTGTGCTCGTGGCCGGAGTCAT 358
Query 298 GATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 357
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 359 GATTGGACGGAGTGTCCGTACGCTCATCCCGGAGAAAAAGCTCGCCGGAGAGATCCGAGG 418
Query 358 AAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGAAAGGT 417
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 419 AAGTACCATTACTCTGGTACGGCTTGTCCTGATTTTCGTAAAGGTGGCTGCAAGAAAGGT 478
Query 418 GATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGG 477
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 479 GACTCTTGTGAGTTTGCTCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGT 538
Query 478 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTCATTCA 537
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 539 ACTCAGCCGTGTAAAGACGGTGGTAACTGTCTCCGGAAAATTTGTTTCTTTGCTCATTCA 598
Query 538 CCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGG-GTTGATTCTTTCGACG 595
||||||||| || |||||||||| | ||||||||| || | | ||||||||||| ||||
Sbjct 599 CCGGATCAGCTT-AGGTTTTTACATACTCGGAGCCCTGA-CAGAGTTGATTCTTTTGACG 656
Query 596 TTTCGTCTCCGATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTTTCTGGTTCGC 655
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 657 TTTCGTCTCCGATTCGTGCTAGAGCATTTCAGCTGTCGATTTCTCCGGTTTCTGGTTCGC 716
Query 656 CGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACTTAGTCGAT 715
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 717 CACCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAGTCACTGAGTCGAT 776
Query 716 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAACTTACAGTTTAATA 775
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 CTCTCGGGTCTTGTTCGATAAACGACGTCGTTCCTTCGTTTAGGAATTTACAGTTTAATT 836
Query 776 AGGTAAAATCATTTCCTCATAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 835
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CGGTAAAATCATTTCCTCGTAACAATCCTTTATTCGGATTCGGGTCGCCCCGTGGATCGA 896
Query 836 TTTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCCGGAAATCTGGATA 895
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 897 TCTTGGGTCCTGGGTTTCAGTCTCTGCCTACAACACCGACCCGACCAGGGAATCTGGATA 956
Query 896 TTTGGGACTATGGGTTAGAGGAAGAGCCTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTG 955
||||||| ||||| || |||||||| || ||||||||||| |||||||||||||||||||
Sbjct 957 TTTGGGAGTATGGTTTGGAGGAAGAACCCGTAATGGAGCGTGTCGTTGAGTCGGGTCGTG 1016
Query 956 AGCTACGAGAAAAGATGCGCGAGAAACTACACAAGGAGAATTGCTTGGATCGGGTTGACC 1015
|||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||
Sbjct 1017 AGCTACGAGAAAAGATGCGCGAGAAACTGCACAAGGAGAATTGCATGGATCGAGTTG-CC 1075
Query 1016 C-GGATCCGGATCAGAAGTCGGGTGATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTG 1074
| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 1076 CAGGATCCGGATCAGAATTTGGGTGAGGCTCCTGATGTCGGGTGGGTATCTGACCTGCTC 1135
Query 1075 ATGTAAAGAATGAAACCCGACTTGTATTTCGAAGTCTCATTGGtttttttGG 1126
|||||||||| ||| | ||| |||||||||||||||||||| ||||||||
Sbjct 1136 ATGTAAAGAAAAAAATCTGACC-GTATTTCGAAGTCTCATTGGCTTTTTTGG 1186
Score = 171 bits (92), Expect = 2e-41
Identities = 124/139 (89%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 1172 ATTTTGGGTCCTGATTTTTCTGAGA-AATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1230
|||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1282 ATTTTGGGGCCTGATTTTTCTAAGATGATCGTTGTATAGATGTGCCTTAGGGTTTTAATT 1341
Query 1231 ATGGAACATTAATATATATA-TCGTGTTTTATAAGGCTATATTGTTAAAT-GTAACCACT 1288
||| || | || || ||||| |||||||||||||| ||||| ||||| || |||||||||
Sbjct 1342 ATGAAATAGTATTA-ATATAATCGTGTTTTATAAGACTATAATGTTAGATTGTAACCACT 1400
Query 1289 TGTTACTAATCTATGAATG 1307
|| ||||||||||||||||
Sbjct 1401 TGGTACTAATCTATGAATG 1419
Score = 84.2 bits (45), Expect = 3e-15
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1126 GGAAGAGATCTTAGTGTGTTCATATTATTTTATTTACTAATTTCGTATTTT 1176
||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1206 GGAAGGGATCTTAGTGTGTTCATATTATTTTATTTACTAATCTCGTATTTT 1256
> AT2G19810.1 | Symbols: | CCCH-type zinc finger family protein
| chr2:8550313-8551858 FORWARD LENGTH=1546
Length=1546
Score = 678 bits (367), Expect = 0.0
Identities = 881/1119 (79%), Gaps = 76/1119 (7%)
Strand=Plus/Plus
Query 2 TAAAGAAGATGATGATCGGAGAAACTC-GC-CGGACTT-ATCCTACTGTTGAAATACCTC 58
|||| || ||||||||||||||| ||| | || || |||| || ||| | || ||||
Sbjct 100 TAAA-AAAATGATGATCGGAGAATCTCATCGTGGTTTTAATCCAACGGTTCATATTCCTC 158
Query 59 CATGGCCAGTTTCTGAAGAGCTTACGGCGTCGGAGtttttttCTCCGGTGATGAATAGTC 118
|||||||| |||||||||| || |||| ||| || | || | | | || | || |
Sbjct 159 CATGGCCACTTTCTGAAGATCTAACGGTGTCTGA----TATT-TAC-G-GAAGTCCAGAC 211
Query 119 -CA-GATTGTAGCATGCTTGAAGCTTTGGCGGCGTTGCAGCGTTATCTTCCGTCTAACGA 176
| || |||| ||| | ||||||||||| | ||| || |||||||||||||| |||||
Sbjct 212 GGAGGA-AGTAGTATGATGGAAGCTTTGGCTGAGTTACAACGTTATCTTCCGTCAAACGA 270
Query 177 ACCGGATCCGGATTCTGACCCGGATTTATTGGGTCCTGATTCACCAATCGATGCTTACT- 235
||||||||||||||| || |||||| | | |||||| |||||||||||||||||||| |
Sbjct 271 ACCGGATCCGGATTCAGATCCGGATCTCTCGGGTCCGGATTCACCAATCGATGCTTA-TA 329
Query 236 CATGTGACCATTTCCGTATGTACGA-TTTCAAAGTCCG-GA-GGTGTGCTCGTGGCCGGA 292
|||| || ||||| || ||||| || ||| ||||| | || | ||||||||||||||||
Sbjct 330 CATGCGATCATTTTCGGATGTATGAGTTT-AAAGT--GAGACGTTGTGCTCGTGGCCGGA 386
Query 293 GTCATGATTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCTCGCCGGAGAGATC 352
| |||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||
Sbjct 387 GCCATGATTGGACGGAGTGTCCTTACGCTCATCCCGGAGAAAAAGCTCGCCGTCGTGATC 446
Query 353 CGAGGAAGTACCATTACTCCGGTACGGCTTGTCCTGATTTTCGCAAAGGTGGTTGCAAGA 412
||||||||| ||||||||||||||||| |||||||| ||||| |||||| |||||||||
Sbjct 447 CGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGAGTTTCGTAAAGGTTGTTGCAAGA 506
Query 413 AAGGTGATTCTTGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCTCGTT 472
||| || | |||||||| ||||||| ||||| |||||||||||||| || || ||||
Sbjct 507 GAGGAGACGCATGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTTCACCCGGCGCGTT 566
Query 473 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGGAAAGTTTGTTTCTTTGCTC 532
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 567 ACCGGACTCAGCCGTGTAAAGACGGTGGTAACTGTCGCCGTCGTGTTTGTTTCTTTGCTC 626
Query 533 ATTCACCGGATCAG-TTGAGGTTTTTACCGAGTCGGAGCCCCGATCGGGTTGATTCTTTC 591
|||| ||||||||| || ||| |||| || | || ||||| ||||| |||||||| |||
Sbjct 627 ATTCGCCGGATCAGATT-AGGGTTTTGCCTAATCAAAGCCCTGATCGTGTTGATTCGTTC 685
Query 592 GACGTTTCGTCTCC---GATTCGTGCTAGAGCGTTTCAGCTCTCGATTTCGCCGGTT-TC 647
||||||| |||||| ||||||| |||||||||||| | |||||||| ||| | ||
Sbjct 686 GACGTTTTGTCTCCTACGATTCGT---AGAGCGTTTCAGTTTTCGATTTCTCCG-TCGTC 741
Query 648 TGGTTCGCCGCCGATGAGTCCAAGAGCTGACTCGGAGTCTTCTCCGATGACTCAATCACT 707
| ||||||||| |||||||| ||| ||||||||| || || | || || | |||
Sbjct 742 TAACTCGCCGCCGGTGAGTCCACGAGGTGACTCGGACTCGTC---G-TGT-TCGTT-ACT 795
Query 708 TAGTCGATCTCTCGGGTCTTGT-TCGATAAACGACGTCGTTCCTTCGTTT-AGGAA-CTT 764
||||| || ||||||||| | | | ||||||||||||| | || | | ||||| ||
Sbjct 796 GAGTCGTTCACTCGGGTCTAATCTGGG-AAACGACGTCGTTGCGTC-TCTCAGGAATCTG 853
Query 765 ACAGTTTAATAAGGTAAAATCAT-T-T--C--C-TCATA-A-CAATCCTTT---A---T- 808
|| ||||||| || || || | | | | | ||||| | ||||| | | |
Sbjct 854 -CAACTTAATAAAGTGAAGTCTTCTCTTTCGTCGTCATACAACAATCAAATCGGAGGATA 912
Query 809 ----TC-GGATTCGGGTCGCCCCGTGGATCGATTTTGGGTCCTGGGTTTCAGTCTCTG-C 862
|| |||||||||||||| ||||||||| ||||||||||||| |||| || || |
Sbjct 913 CGGATCCGGATTCGGGTCGCCTCGTGGATCGGTTTTGGGTCCTGG-TTTCCGTAGCTTAC 971
Query 863 CTACAACACCGACCCGACCCGGAAATCTGGATATTTGGGACTATGGGTTAGAGGAAGAGC 922
| || |||||||||||||| || | || | |||||||| |||| || |||||||| |
Sbjct 972 CAACTACACCGACCCGACCTGGTTTTATGAACATTTGGGAGAATGGCTTGGAGGAAGAAC 1031
Query 923 CTGTAATGGAGCGGGTCGTTGAGTCGGGTCGTGAGCTACGAGAAAAGATGCGCGAGAAAC 982
| | ||||| ||||||| ||||||||||||| || |||| || || |||||| |
Sbjct 1032 CGGCGATGGAACGGGTCG---AGTCGGGTCGTGAACTGCGAGCGCAGCTGTTCGAGAAGC 1088
Query 983 T-A-CACAAGGAGAATTGCTTGGATCGGGTTGACCCGGATCCGGATCAGA-AGTCGGGTG 1039
| | || ||| |||||||| ||| |||| |||| ||||||||||||||| || ||||||
Sbjct 1089 TGAGCA-AAG-AGAATTGCATGGGTCGGATTGAACCGGATCCGGATCAGGGAG-CGGGTG 1145
Query 1040 ATGCTCCTGATGTCGGGTGGGTATCTGACCTGCTGATGT 1078
|| ||||||||||||||||||| |||||| || | ||||
Sbjct 1146 ATACTCCTGATGTCGGGTGGGTCTCTGACTTGGTTATGT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64306898145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5