BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491847
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1009 0.0
> AT4G29110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to chitin; LOCATED
IN: vacuole; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to
109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14348801-14349701 FORWARD
LENGTH=901
Length=901
Score = 1009 bits (546), Expect = 0.0
Identities = 623/660 (94%), Gaps = 6/660 (1%)
Strand=Plus/Plus
Query 16 aaaa-aaaaaaTATTCTCTCCAAAGAAAATAGTAAAAATGGAATCTTCTGTACCAAAGAG 74
|||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 29 AAAATAAAAAACATTCTCTCCAAAGAAAATAGTAAAAATGGAATCTTCGGTACCAAAGAG 88
Query 75 AGGCTTATACATGGAAATGGAACAAAACGCTCAAGTCGCAGCCAAGAGGCTTTGGAAAAT 134
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 89 AGGCTTATACATGGAAATGGAACAAAACGCTCAAGTGGCAGCCAAAAGGCTTTGGAAAGT 148
Query 135 CGTCCGCATAGTCTTCTGCGTTTTAAAAACCGGTACGGTCAAAAACAAGCTCATGCTTGA 194
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGTCCGCATCGTCTTCTGCGTTTTAAAAACCGGTACGGTCAAAAACAAGCTCATGCTTGA 208
Query 195 CTTAAACCTAATGCTTAAGAGAGGCAACAAAGCCATCACTAACCTCCGCCGCCGATCAAG 254
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 209 CTTAAACCTAATGCTTAAGAGAGGCAACAAAGCCATAACCAACCTCCGCCGTCGATCTAG 268
Query 255 CCCCACCGGCGGTTC-TGACGTCAGCTCCAC---ACGCGTCCGTGACTACGACCCTTTTG 310
| |||||||| | | ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 269 CTCCACCGGCAGC-CATGACGTCAGCTCCTCCTCACGCGTCCGTGACTACGACCCTTTTG 327
Query 311 CCTTTATGTCCAAACGCAAACGCCGCGTCCATGGCGGTTATGACAACGAAGAAGATGCGG 370
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 328 CCTTTATCTCCAAACGCAAACGCCGCGTCCACGGCGGTTATGACAACGAAGAAGATGCGG 387
Query 371 TGGAGGCAGCGGTAAAGAAAGTTTTTGAGTTGTTAGGAGAGAATGATAGGAAGACGGTGG 430
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 388 TGGAGGCAGCGGTCAAGAAAGTTTTTGAGTTGTTAGGAGAGAATGATAAGAAGACGGTGG 447
Query 431 CGGCAGAATCGGCCAGAGAGTCGCCGCTGATAATGTCTCCGGCAGTGAGACAGCTTAGGG 490
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 448 CGACAGAATCGGCCAGAGAGTCGCCGCTGATAATGTCCCCGGCAGTGAGACAGCTCAGGG 507
Query 491 TGACGGATTCGCCGTTCCCGTTAGACGACGGCGGAGATCATGATCATGTGGTGGATAAGG 550
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct 508 TGACGGATTCGCCGTTCCCGTTAGACGACGGTGGAGATCACGATCATGTGGTGGACAAAG 567
Query 551 CCGCAGAGGAGTTTATAAAGAAGTTTTATAAGAACCTTAAGATGCAAAAGAAGATGGCTA 610
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 568 CCGCAGAGGAGTTTATAAAGAAGTTTTATAAGAACCTTAAGCTGCAAAAGAAGATGACTA 627
Query 611 ACACGTTAGAGTCGCCGTACCACGATGGATGGGTTAGATGATCCAAACGTTTAGAGACCA 670
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 628 ACGCATTAGAGTCGCCGTACCACGATGGATGGGTTAGATGATCCAAGCGTTTAGAGACCA 687
Score = 270 bits (146), Expect = 1e-71
Identities = 172/184 (93%), Gaps = 3/184 (2%)
Strand=Plus/Plus
Query 663 AGAGACCAATAAGGGGAAAATTGAAAATATATGTATAAATATTGGGGTTGGAACTTTTCT 722
||| || |||||||||| |||||| |||| ||||||||||| ||||||| |||||||||
Sbjct 719 AGA-ACAAATAAGGGGACAATTGAGAATACATGTATAAATAATGGGGTTACAACTTTTCT 777
Query 723 TAGATATAT-TTCCATTTGAGTGTTGAATGCTTAAATTTGGCTTGTGTTTATTTCGTCGG 781
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 TAGATATATGTTCCATTTGAGTGTTGAATACTTAAATTTGGCTTGTGTTTATTTCGTCGG 837
Query 782 TAGTTT-GATGTAAACTTGGCTATGTATATATTTTCCTATCTTAATGAGAAGAATACTAT 840
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TAGTTTTGATGTAAACATGGCTATGTATATATTTTCCTATCTTAATGAGAAGAATACTAT 897
Query 841 ATAC 844
||||
Sbjct 898 ATAC 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5