BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491854 Length=1599 Score E Sequences producing significant alignments: (Bits) Value AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase 2... 2606 0.0 AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2... 1738 0.0 > AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase 2A | chr4:14312303-14314600 FORWARD LENGTH=1612 Length=1612 Score = 2606 bits (1411), Expect = 0.0 Identities = 1540/1602 (96%), Gaps = 9/1602 (1%) Strand=Plus/Plus Query 1 TACaagagagaaacaaagtaacctgaagaactcaagagaaatcgagag-agaagagaaTC 59 ||||||||||||| |||| ||||| |||||| |||||||| ||||| || |||||| Sbjct 8 TACAAGAGAGAAAGAAAGGAACCT--CGAACTC-AGAGAAATTGAGAGAAG-AGAGAAGA 63 Query 60 ATCATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGATCGGAAGCCTGATGGT 119 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 64 ATCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGGAGATCGGAAACCTGATGGT 123 Query 120 GGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 179 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 124 GGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACCGGCTCGTGTAGGGAGGAAG 183 Query 180 CAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 239 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 CAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTTCCGACGGTGACTCCGTCTACT 243 Query 240 AAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTATTTGTTGATGGAGGAA 299 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 244 AAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGGATTATTTGTTGATGGAGGAA 303 Query 300 GAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAAGAAGATAGA 359 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 304 GAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGAAAGCTGAGGAAGATAGA 363 Query 360 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 TCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGAATTTGGAAGAGTTGATT 423 Query 420 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGAGTACTATGTTGGGATTTTG 479 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 424 GATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGACCTGAGTACTACGTTGGGATTTTG 483 Query 480 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 484 TCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGATTTTGATGCATAATAAGGTT 543 Query 540 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 544 CTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAATGGTGTCTGTGATGAAAGTT 603 Query 600 GAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 659 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 GAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTTAGAAGCTCAGATTCAGGAG 663 Query 660 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 664 ATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTGAGTTGTATGAAGATATTGGTATT 723 Query 720 AAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 779 || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 724 AAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTGGAACTGGGAAGACATTGCTTGCT 783 Query 780 AAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 839 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 784 AAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGAGAGTTGTTGGTAGTGAGCTGATT 843 Query 840 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGCTTTTCAGAGTTGCCGATGAC 899 ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| Sbjct 844 CAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAGAACTTTTCAGAGTTGCTGATGAC 903 Query 900 CTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTATTGGTACCAAGCGGTATGAC 959 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 904 CTTTCACCATCAATCGTCTTCATAGATGAGATTGATGCTGTTGGTACCAAGCGGTATGAC 963 Query 960 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 964 GCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGTTGGAACTTCTGAACCAGCTT 1023 Query 1020 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGACT 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1024 GATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTGCAACAAACAGAATCGAGAGT 1083 Query 1080 CTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1139 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1084 CTTGACCCAGCACTGCTTCGACCTGGACGGATTGATAGGAAAATCGAGTTCCCTCTCCCA 1143 Query 1140 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1144 GATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCGAAGATGACTCTCTCGGAA 1203 Query 1200 GATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGTTCTCAGGAGCAGATATCAAG 1259 ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 1204 GATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACGAGTTCTCAGGAGCTGATATAAAG 1263 Query 1260 GCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGCGTCGTATGAAGGTGACGCAT 1319 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| Sbjct 1264 GCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGGAGCGTCGTATGAAGGTGACACAT 1323 Query 1320 CCTGATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGTGTCCCTGAA 1379 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1324 CCTGATTTCAAGAAAGCAAAGGAGAAGGTTATGTTCAAGAAGAAAGAAGGCGTCCCTGAA 1383 Query 1380 GGCCTTTACATGTAAAATCATAATCATATCGTCATCATCGGCTTTCCTCCTCTACACTTT 1439 ||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1384 GGCCTCTACATGTAAAATTATAATCATATCGTCATCATCGGCTTTCCTCCTCCACACTTT 1443 Query 1440 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1444 GTTATAATACTTTTGCTTCTGCTTAGGATCTTTCTGGTCATATAAATTGATCATGTTTTC 1503 Query 1500 TGATCTCCTTCAGTAAAACGATTCCTCATTTCCATTTAGGATACCTATTTCTG-ATTAGC 1558 ||||||||| | ||||||| |||||||||||||||||||||| ||||||| | |||| Sbjct 1504 TGATCTCCTCCGGTAAAACAATTCCTCATTTCCATTTAGGATGTCTATTTC-GCATTAAA 1562 Query 1559 CTTAACCAACTGAAACCAAGACCaaa-aaaaCAACCTGATCT 1599 |||||||||||||||||||| ||||| |||| ||| |||||| Sbjct 1563 CTTAACCAACTGAAACCAAGCCCAAATAAAAAAAC-TGATCT 1603 > AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2:8692700-8695084 FORWARD LENGTH=1615 Length=1615 Score = 1738 bits (941), Expect = 0.0 Identities = 1219/1354 (90%), Gaps = 16/1354 (1%) Strand=Plus/Plus Query 47 agagaaga-gaaTCATC-ATGGGTCAAGGACCATCCGGAGGATTGAATCGGCAAGGAGAT 104 |||| ||| ||| || | |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 21 AGAG-AGACGAAGCA-CAATGGGTCAAGGACCTTCCGGCGGATTGAATCGGCAAGGAGAT 78 Query 105 CGGAAGCCTGATGGTGGCGATAAGAAGGAGAAGAAGTTCGAGCCGGCGGCACCACCGGCT 164 ||||| || |||||||| || |||||||||||||||||||| || || |||||||| ||| Sbjct 79 CGGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCACCACCTGCT 138 Query 165 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-CCGAC 223 |||||||||||||||||||||||||||||||| || || |||||||||||| || ||||| Sbjct 139 CGTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGCGAGA-TTGCCGAC 197 Query 224 GGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAGCGGATCAAGGATTA 283 ||||||||| |||||||| |||||||| || || |||||||||||||| |||||||| || Sbjct 198 GGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTGAAATTGGAGCGAATCAAGGACTA 257 Query 284 TTTG-TTGATGGAGGAAGAGTTTGTTGCGAATCAAGAGAGGTTGAAACCTCAGGAAGAGA 342 |||| || |||||||||||||| || |||||||| ||||| ||||||||||||||||||| Sbjct 258 TTTGCTT-ATGGAGGAAGAGTTCGTAGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGA 316 Query 343 AAGCTGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGGA 402 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 317 AAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCA 376 Query 403 AT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGGCCTGA 460 || || |||||| || ||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct 377 ATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCGGTTGGTCCTGA 434 Query 461 GTACTATGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTTCGAT 520 |||||| ||||| |||||||| ||||||||||| ||||||||||||||||| || || || Sbjct 435 GTACTACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTAT 494 Query 521 TTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATCCAAT 580 |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 495 TTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAAT 554 Query 581 GGTGTCTGTGATGAAAGTTGAGAAGGCTCCTTTGGAGTCATATGCTGATATTGGAGGTTT 640 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 555 GGTGTCTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAGGTTT 614 Query 641 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTT-CCTTTGACTCATCCTGAGT 699 ||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||| Sbjct 615 AGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAG-TTACCTTTAACACATCCCGAGC 673 Query 700 TGTATGAAGATATTGGTATTAAGCCACCTAAGGGTGTGATTTTGTATGGTGAGCCTGGAA 759 |||||||||||||||| ||||||||||| || |||||||| |||||||||||||| || | Sbjct 674 TGTATGAAGATATTGGAATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCA 733 Query 760 CTGGGAAGACATTGCTTGCTAAGGCGGTGGCGAATTCTACATCAGCTACTTTCTTGAGAG 819 ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| | | Sbjct 734 CTGGGAAGACATTGCTTGCTAAGGCAGTGGCAAATTCTACTTCAGCTACTTTCTTGCGTG 793 Query 820 TTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGGGAGC 879 |||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 794 TTGTCGGTAGTGAACTGATTCAGAAGTATTTAGGAGATGGTCCCAAGCTTGTGAGGGAAC 853 Query 880 TTTTCAGAGTTGCCGATGACCTTTCACCATCAATTGTCTTCATAGATGAGATTGATGCTA 939 ||||||| ||||| ||||||||||| || || ||||| |||||||| |||||||||||| Sbjct 854 TTTTCAGGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTG 913 Query 940 TTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTATGT 999 |||| ||||||||||||||||| ||||||| || |||||||| ||||||||||| |||| Sbjct 914 TTGGCACCAAGCGGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGT 973 Query 1000 TGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCCTTG 1059 ||||||| ||||||||||||||||| |||||||||||||||||||||||||| || || | Sbjct 974 TGGAACTACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTTATTCTCG 1033 Query 1060 CAACAAACAGAATCGAGACTCTTGACCCGGCACTGCTTCGACCTGGACGGATTGATAGGA 1119 | |||||||| ||||||| ||||||||||||||| ||| |||| || ||||| || |||| Sbjct 1034 CGACAAACAGGATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGA 1093 Query 1120 AAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1179 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1094 AAATCGAATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACAT 1153 Query 1180 CGAAGATGACTCTCTCGGAAGATGTAAACCTGGAAGAGTTTGTGATGACAAAAGACGAGT 1239 | ||||||||| | | |||||||| ||| | ||||||||||| |||||||||||||||| Sbjct 1154 CAAAGATGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGT 1213 Query 1240 TCTCAGGAGCAGATATCAAGGCTATATGCACCGAGGCTGGTCTACTTGCTCTGAGGGAGC 1299 |||||||||| ||||| ||||| |||||||| || |||||||| |||||||| || |||| Sbjct 1214 TCTCAGGAGCTGATATAAAGGCAATATGCACAGAAGCTGGTCTGCTTGCTCTTAGAGAGC 1273 Query 1300 GTCGTATGAAGGTGACGCATCCTG-ATTTCAAGAAAGCGAAGGAGAAGGTTATGTTCAAG 1358 |||| ||||| ||||||||| || | |||||||| |||||||||||||||||||||||| Sbjct 1274 GTCGGATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAG 1332 Query 1359 AAGAAAGAAGGTGTCCCTGAAGGCCTTTACATGT 1392 ||||||||||| || |||||||| |||||||||| Sbjct 1333 AAGAAAGAAGGAGTTCCTGAAGGTCTTTACATGT 1366 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78965457285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5