BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491882 Length=679 Score E Sequences producing significant alignments: (Bits) Value AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre s... 931 0.0 AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr... 339 3e-92 > AT4G28750.1 | Symbols: PSAE-1 | Photosystem I reaction centre subunit IV / PsaE protein | chr4:14202758-14203961 REVERSE LENGTH=698 Length=698 Score = 931 bits (504), Expect = 0.0 Identities = 635/694 (91%), Gaps = 26/694 (4%) Strand=Plus/Plus Query 4 CAATCAAGAACCACTCTTTCGTGTCGGAATAACAATaagaaagaaagaaaaagaaaagaa 63 |||||||||||||||||||||||||| |||||||||||||||||||| | ||||| Sbjct 11 CAATCAAGAACCACTCTTTCGTGTCGCAATAACAATAAGAAAGAAAG----A-AAAAG-- 63 Query 64 aaaaaCCAGAGATGGCAATGACGACAGCATCTACGGTGTTTGTTCTGCCTGCCAACGTCA 123 ||||||||||||||| |||||||||||||||||||| |||||||| || ||||| |||| Sbjct 64 -AAAACCAGAGATGGCGATGACGACAGCATCTACGGTATTTGTTCTACCGGCCAATGTCA 122 Query 124 CCTCGGCCGCCGGCGCTTCGTCGTCCAGGAACTCCGTGTCTTTCTTGCCGATGAGAAACG 183 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 123 CCTCGGTCGCCGGCGCTTCGTCGTCCAGGAGCTCCGTGTCTTTCTTGCCGATGAGAAACG 182 Query 184 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATGCGGCTCCGGCAACCTCTTCATCGG 243 ||||||||||||||||||||||||||||||||||| | |||||||| ||||||| || Sbjct 183 CCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGATCCTGCTCCGGCTTCCTCTTCTTCAA 242 Query 244 AAGGTTCTCCGGCAGCTGCCGCTGCTCCGGCTGGAGCTGCTGCCACCAAACCCAAGCCAC 303 ||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 243 AAGATTCTCCGGCAGCTGCCGCTGCTCCGGATGGAGCTACTGCCACCAAACCCAAGCCAC 302 Query 304 CTCCAATTGGCCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 363 | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 CACCGATTGGTCCTAAGAGAGGGTCTAAGGTCAAGATTCTAAGGAGAGAATCCTATTGGT 362 Query 364 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCGAAGACCCGATACCCGGTTG 423 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 363 TCAAGAACGTTGGATCAGTTGTTGCCGTTGATCAGGACCCTAAGACTCGATACCCGGTTG 422 Query 424 TGGTTCGGTTCGCGAAAGTGAATTATGCCAACATATCGACCAACAACTATGCATTGGACG 483 |||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 423 TGGTCCGGTTCGCAAAAGTCAATTACGCCAACATATCGACCAACAACTATGCATTGGATG 482 Query 484 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACT--GTGTATTCAATACCGG 541 |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 483 AGGTCGAAGAAGTTGCAGCTTAAATGGGAGAATTCAAAAACTCTGTGTATTCTATACCGG 542 Query 542 TCTATCCGTTTGTAACATGACCCGAACCGTATGTACCG-AAAAGTTTACCAATTATTTCT 600 | |||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| Sbjct 543 TTTATCCGTTTGTAACTTGACCCAAACCGTATGTACCGCAAAAGTTTACCAATTATTTCT 602 Query 601 CCTCATCTGAATCTCGAGCCGGTTTTCTTATT-TTT-------TG-------AAAATTCA 645 |||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 603 CCTCATCTGAATCTCGAGCCGGTTTTCTTATTCTTTCACAGAATGTGTTTGGAAAATTCA 662 Query 646 GTTAAAAGTCTCTTTCTAATCATGGTTAGCTCTC 679 |||||||||||||||||| ||||||||||||||| Sbjct 663 GTTAAAAGTCTCTTTCTACTCATGGTTAGCTCTC 696 > AT2G20260.1 | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736734-8737767 FORWARD LENGTH=607 Length=607 Score = 339 bits (183), Expect = 3e-92 Identities = 291/343 (85%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 159 GTGTCTTTCTTGCCGATGAGAAACGCCGGTTCTAGGCTCGTAGTCAGGGCAGCCGAAGAT 218 |||||||||||||||||||||| | |||||| ||||| |||||||| || || |||||| Sbjct 137 GTGTCTTTCTTGCCGATGAGAAGCTTCGGTTCAAGGCTAGTAGTCAGAGCGGCGGAAGAT 196 Query 219 GCGGCTCCGGCAACCTCTTCATCGGA-AGGTTC-TCCGGCA--GCTGCCGCTGCTCCGGC 274 | ||||||||||| | || ||||| | |||| ||| || ||||| ||||||||||| Sbjct 197 ACACCTCCGGCAACCGCCTCGTCGGATA-GTTCTTCCACCACCGCTGCTGCTGCTCCGGC 255 Query 275 TG-GAGCTGCTGCCACCAAACCCAAGCCACCTCCAATTGGCCCTAAGAGAGGGTCTAAGG 333 | || | | ||| | || | || || |||||||||||||| |||||||| || |||| Sbjct 256 -GAAAGTTCCGGCCGCTAAGGCTAAACCTCCTCCAATTGGCCCAAAGAGAGGATCCAAGG 314 Query 334 TCAAGATTCTAAGGAGAGAATCCTATTGGTTCAAGAACGTTGGATCAGTTGTTGCCGTTG 393 ||||||||||||||| |||||| || |||| ||||||||||||||||||||| ||||||| Sbjct 315 TCAAGATTCTAAGGAAAGAATCATACTGGTACAAGAACGTTGGATCAGTTGTGGCCGTTG 374 Query 394 ATCAGGACCCGAAGACCCGATACCCGGTTGTGGTTCGGTTCGCGAAAGTGAATTATGCCA 453 |||||||||||||||||||||| ||||||||||| |||||||| || |||||||| || | Sbjct 375 ATCAGGACCCGAAGACCCGATATCCGGTTGTGGTCCGGTTCGCCAAGGTGAATTACGCGA 434 Query 454 ACATATCGACCAACAACTATGCATTGGACGAGGTCGAAGAAGT 496 | ||||||||||||||||| |||||||||||||| |||||||| Sbjct 435 ATATATCGACCAACAACTACGCATTGGACGAGGTGGAAGAAGT 477 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32853132138 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5