BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491899 Length=1090 Score E Sequences producing significant alignments: (Bits) Value AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible 1... 1663 0.0 > AT4G28640.2 | Symbols: IAA11 | indole-3-acetic acid inducible 11 | chr4:14142135-14143969 FORWARD LENGTH=1103 Length=1103 Score = 1663 bits (900), Expect = 0.0 Identities = 1036/1097 (94%), Gaps = 28/1097 (3%) Strand=Plus/Plus Query 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGTCTTCTTGTTCATCCTTTGTTTCCCTTTTTCTTTCTCACTGTTTCTGCCTTACTTAA 60 Query 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTCTTCTTCC-TTCCCTCACAATCAA 119 |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| Sbjct 61 AGTCTCAATCTTTGCTTCAAATTCAACCCATCTCTTTTTCCTCCCTTCCCTCACAATCAA 120 Query 120 ATCAAATCTCAATTCTCAGCTTCTGGTTT-GTCTTAAATGGAAGGCGGTTCCGCTAGTGG 178 | | ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 121 A--A--TCTTAATTCTCAGCTTCTGGTTTTGTCGAAAATGGAAGGCGGTTCCGCTAGTGG 176 Query 179 ATCAGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAAGATTCTTCTTC 238 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 177 ATCGGCTTCGGCTTTGTCAAACGATGAAAATCTCGTCGTTTCTTGTGAGGATTCTTCTTC 236 Query 239 TCCTGTAGGGAATGAGCTCGAGCTTGGTCTTACGTTGAGCCTTGGTC-CAAAAGGGTATC 297 |||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| Sbjct 237 TCCTATAGGGAATGAGCTTGAGCTTGGTCTTACGTTGAGCCTTGGTCGCAAA-GGGTATC 295 Query 298 GAGATTGTAGGGTTTCTTATGCTGATGAttcttcttcttcttcgtcttcatcttcttctc 357 ||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| Sbjct 296 GAGATTGTAGGGTTT---ACGCTGATGATTCTTCTTCTTCTTCATC---ATCTTCTTCTC 349 Query 358 tGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGAACAGCTGATTCCATGGCTGCAACTA 417 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 350 TGAGCAGAGCTAGCGTAATTGCTGGGATCAAGAGGACAGCTGATTCCATGGCTGCAACTA 409 Query 418 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 410 GTGGGCAAGTTGTGGGATGGCCACCAATAAGGACTTACAGAATGAACAGTATGGTTAACC 469 Query 478 AGGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGAAGTAAACAAGA 537 | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 470 AAGCTAAGGCTTCAGCCACTGAAGATCCGAACTTGGAGATAAGTCAAGCCGTAAACAAGA 529 Query 538 ATAGAACTGATGCAACAAAGATGAGAAATTCCATGTTTGTTAAAGTGACTATGGATGGCA 597 |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 530 ATAGAAGTGATTCAACAAAGATGAGAAATTCCATGTTTGTTAAGGTGACTATGGATGGCA 589 Query 598 TTCCGATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 657 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 TTCCTATTGGAAGGAAAATCGATCTGAATGCTCATAAATGCTATGAATCATTGTCAAACA 649 Query 658 CTCTTGAAGAAATGTTTCTGAAACCCAAATTAGGTTCAAGCACACTAGAAACCGATGGTC 717 |||| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 650 CTCTAGAGGAAATGTTTCTGAAACCTAAATTAGGTTCACGCACACTAGAAACCGATGGTC 709 Query 718 ACATGGAAACACCGCTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 777 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 ACATGGAAACACCGGTCAAGATACTACCAGATGGGTCTTCCGGATTAGTACTAACGTATG 769 Query 778 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGACGTTCCGTGGGGGATGTTTATTGGTT 837 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 770 AAGACAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCGTGGGGGATGTTTATTGGTT 829 Query 838 CCGTGAGAAGGCTCCGGATAATGAAAACATCGGAAGCTACTGGTAAAGCTCAAATGATAT 897 | |||||||||||||||||||||||||||||||| ||||||||||||| | |||||| Sbjct 830 CAGTGAGAAGGCTCCGGATAATGAAAACATCGGAGGCTACTGGTAAAG---A--TGATAT 884 Query 898 TATGAAGCAAATAATAATCTACGAAGAACCCTTTCTGTTCGAAGCCAGTAATAAGACGGA 957 |||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| || Sbjct 885 TATGAAGCAAATAATAATCTACGAAGAACCCTTTATGTTTGAAGC-AGTAATAAGACAGA 943 Query 958 TCACAGATCAAAGAGAAGACAAAAACATGGTAAGAAGcttcttcttcttcttctctCCCC 1017 |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| Sbjct 944 TCACAGATCAAAGAGAAGACAAAAACATTGTAAGAAGCTTCTTCTTCTTCT-CTC-CCC- 1000 Query 1018 TTTTACAGttt-tttt--GGCTCTGCCAATTTTCTTT-AGTTAGTTATATGTTCTCTTTG 1073 ||| ||||||| |||| |||||||||| |||||||| |||||||||||||||||||||| Sbjct 1001 TTT-ACAGTTTCTTTTTTGGCTCTGCCATTTTTCTTTTAGTTAGTTATATGTTCTCTTTG 1059 Query 1074 TAAATCACACTTCAAAA 1090 |||||||||||| |||| Sbjct 1060 TAAATCACACTTTAAAA 1076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53413379880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5