BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491921
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4... 2207 0.0
AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2... 752 0.0
AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3... 211 1e-53
> AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4:14073042-14075271
FORWARD LENGTH=1495
Length=1495
Score = 2207 bits (1195), Expect = 0.0
Identities = 1408/1503 (94%), Gaps = 46/1503 (3%)
Strand=Plus/Plus
Query 1 GATAATAAAAGAAGAAAAAAGG-AAACAAATGGAGAAGGGAAGAGGCAAGAGT-ACCAAG 58
|||||||||||||| |||||| ||| |||||||||||||||||||||||| | | |||
Sbjct 1 GATAATAAAAGAAG--AAAAGGAAAAGAAATGGAGAAGGGAAGAGGCAAGA-TGGCAAAG 57
Query 59 CTGTGA-TT-AAA-A----CA-----CCGTCAACGGAGACAAACAAAGATCGTGTTTTCT 106
|||||| || ||| | || ||||||||||||||||||||||||||||||||||
Sbjct 58 CTGTGATTTAAAACACCGTCACCTCCCCGTCAACGGAGACAAACAAAGATCGTGTTTTCT 117
Query 107 CGAACCTTCCACGAGATTCTTTACTAAGCC--A-AAGCAGAAGAGACCAGAGAACGAAGA 163
|||||||||||||||| | ||||||||| | ||| |||||||||| ||| ||||| |
Sbjct 118 CGAACCTTCCACGAGA---TATACTAAGCCAAAGAAGAAGAAGAGACCTGAG-ACGAACA 173
Query 164 AGAAATCCAGAAATTACCAATTTC-tttttttGATTAATCGGATTCAGGAAAAGTGAAGA 222
|||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 174 AGAAATCCAGAAATTACCAATTCCTTTTTTTTGTTTAATCGAATTCAGGAAAAGTGAAGA 233
Query 223 AACGTAAGAGAGAAGAC------GAAGAAGGTGAGATGGGAGTGGATTATTACAAGGTGT 276
|||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 234 AACGAAAGAGAGAAGACAAAGAAGAAGAAGGTGAGATGGGAGTTGATTATTACAAGGTTT 293
Query 277 TACAGGTTGATAGAAGCGCTAACGACGATGACCTTAAGAAAGCTTATAGAAAACTCGCTA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TACAGGTTGATAGAAGCGCTAACGACGATGACCTTAAGAAAGCTTATAGAAAACTCGCTA 353
Query 337 TGAAATGGCATCCCGACAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGC 396
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGC 413
Query 397 AGATCTCTGAAGCCTACGATGTTCTTAGCGATCCTCAAAAGAGAGCGGTATATGATCAAT 456
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 AGATCTCTGAGGCCTACGATGTTCTTAGCGATCCTCAAAAGAGAGCTGTATATGATCAAT 473
Query 457 ACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTCCCAATGCTG---GTGGTGGAGCCT 513
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 474 ACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTCCCAATGCTGCTACTAGTGGAGCAT 533
Query 514 CATACTTCTCAACAGGAGAAGGACCTTCATCTTTCAGATTCAACCCGAGAAGTGCTGATG 573
| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||
Sbjct 534 CCTACTTCTCAACAGGAGATGGATCTTCGTCTTTCAGATTCAACCCGAGAAGTGCAGATG 593
Query 574 ATATATTCGCTGAGTTTTTCGGGTTCTCGACCCCG-TT--T---GGTGGTGGTGG---TG 624
||||||||||||||||||||||||||||||||||| || | ||||||||||| ||
Sbjct 594 ATATATTCGCTGAGTTTTTCGGGTTCTCGACCCCGTTTGGTGGCGGTGGTGGTGGCACTG 653
Query 625 GAGGGCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATACCTCTTTTGGTGAAG 684
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 654 GAGGGCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATGCCTCGTTTGGTGAAG 713
Query 685 GAGCAGGTGGTGGAGGAGCTATGcatcatcatcaccatcatcatcatcaCGGTGCAGCTA 744
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 GAGCAGGTGGAGGAGGAGCTATGCATCATCATCACCATCATCATCATCACGCTGCAGCTA 773
Query 745 GGAAAGTGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAAGATCTCTACAAAGGAA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GGAAAGTGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAAGATCTCTACAAAGGAA 833
Query 805 CTACCAAGAAGATGAAGATCTCCAGGGAGATTGTAGATGTCAGCGGCAAGGCAATGCAAG 864
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 CCACCAAGAAGATGAAGATCTCCAGGGAGATTGTAGATGTCAGCGGTAAGGCAATGCAAG 893
Query 865 TGGAAGAGATTCTAACGATTGGAGTGAAACCCGGGTGGAAGAAAGGCACAAAGATCACAT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGGAAGAGATTCTAACGATTGGAGTGAAACCCGGGTGGAAGAAAGGCACAAAGATCACAT 953
Query 925 TCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGGATCTAGTCTTCATCATTG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGGATCTAGTCTTCATCATTG 1013
Query 985 ACGAGAAACCCCATCCAGTGTTTACCCGTGAGGGCAACGACTTGATTGTCACACAGAAAG 1044
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1014 ACGAGAAACCCCATCCAGTGTTTACCCGTGAGGGCAACGACCTGATTGTCACACAGAAAG 1073
Query 1045 TCTCACTAGCTGATGCCTTAACAGGCTACACTGCAAACATAACGACCCTTGATGGTCGTA 1104
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1074 TCTCACTAGCTGATGCCTTAACAGGCTACACCGCAAACATAGCGACCCTTGATGGCCGTA 1133
Query 1105 CACTTACAATCCCGATCACAAACGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG 1164
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1134 CACTTACAATCCCGATCACAAATGTGATCCATCCAGAGTATGAAGAGGTGGTTCCTAAAG 1193
Query 1165 AGGGAATGCCACTTCAAAAAGATCAGACGAAGAAAGGGAACTTAAGGATCAAGTTCAATA 1224
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1194 AGGGAATGCCACTCCAGAAAGATCAGACAAAGAAAGGGAACTTAAGGATCAAGTTCAATA 1253
Query 1225 TCAAGTTTCCAGCAAGATTAACTGCAGAACAGAAAGCTGGGTTTAAGAAGCTTATTGGGT 1284
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1254 TCAAGTTTCCAGCGAGATTAACTGCGGAACAGAAAGCTGGGTTTAAGAAGCTTATTGGGT 1313
Query 1285 GATGATTAAAGCTTCTCTGTCTTATGATGTGTGGAGATTGGGTTAAATTTGGTAATATAC 1344
|||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1314 GATGATTAAAGCATCTCTGTCTTGTGATGTGTGGAGATTGGGATAAATTTGGTAATATAC 1373
Query 1345 GATTTATATAGGGAATGCTCTCCCTCTTCATTAA-TTTCGTGTTGTTAAACAAGTCTTCT 1403
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1374 AATTTATA--GGGAATTATCTCCCTCTTCATTAAATTTCGTGTTGTTAAACAAGTCTTCT 1431
Query 1404 TTTTAAAGAATAGTTCTTTCAAGATTTGGTACATGTCTTCCATAAACAAAAATTGAAGAT 1463
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1432 TTTTAAAGAATAGTTTTTTCAAGATTTGGTACATGTCCTCCATAAACAAAAATTGAAGAT 1491
Query 1464 CAC 1466
|||
Sbjct 1492 CAC 1494
> AT2G20560.1 | Symbols: | DNAJ heat shock family protein | chr2:8848130-8850010
REVERSE LENGTH=1432
Length=1432
Score = 752 bits (407), Expect = 0.0
Identities = 865/1079 (80%), Gaps = 59/1079 (5%)
Strand=Plus/Plus
Query 196 ATTAATCGGATTCAGGAAAAGTGAAGAAACGTAAGAGAGAAGACGAAGAAGGT-GAGATG 254
||||||| || ||||||||||||||||| || | | || ||| ||||||| | | ||||
Sbjct 146 ATTAATCAGAATCAGGAAAAGTGAAGAAGCG--A-A-AG-AGA-GAAGAAGATCG-GATG 198
Query 255 GGAGTGGATTATTACAAGGTGTTACAGGTTGATAGAAGCGCTAA-CGACGATGACCTTAA 313
||||||||||| ||||| || | || || ||| | ||||| || ||||||||| || ||
Sbjct 199 GGAGTGGATTACTACAAAGTCCTCCAAGTCGATCGCAGCGC-AAGCGACGATGATCTCAA 257
Query 314 GAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCCGACAAGAA-CCCTAACAACAAAA 372
|||||||||| | ||||| || |||||||||||||||||||| || ||| ||||||||||
Sbjct 258 GAAAGCTTATCGTAAACTTGCCATGAAATGGCATCCCGACAAAAATCCC-AACAACAAAA 316
Query 373 AAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAAGCCTACGATGTTCTTAGCGATCCTC 432
| || || || |||| |||||| || || || ||||| ||||| || || || |||||||
Sbjct 317 AGGATGCCGAAGCTATGTTCAAACAAATATCCGAAGCTTACGAGGTACTAAGTGATCCTC 376
Query 433 AAAAGAGAGCGGTATATGATCAATACGGTGAGGAAGGGTTAAAAGGGAATGTGCCACCTC 492
| |||| ||| || ||||||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 377 AGAAGAAAGCTGTGTATGATCAATATGGTGAGGAAGGTTTGAAAGGGAACGTGCCACCTC 436
Query 493 CCAATGCTGGTGGTGGAGCCT-CATACTTCTCAACAGGAGAAGGACCTTCATCTTTCAGA 551
| |||| ||||||| || | |||||||| || || || || || | || |||||
Sbjct 437 CGGATGC---AGGTGGAG-CTACTTACTTCTCTACCGGGGATGGTCCAACGTCCTTCAGG 492
Query 552 TTCAACCCGAGAAGTGCTGATGATATATTCGCTGAGTT-TTTCGGGTTCTCGACCCCGTT 610
||||||||||||| ||| ||||||||||| |||||||| ||| || ||||| | ||| ||
Sbjct 493 TTCAACCCGAGAAATGCGGATGATATATTTGCTGAGTTCTTT-GGCTTCTCTAGCCCATT 551
Query 611 TGGTGGTGGTGGTGGAGG-GCAGAGATTCGCTAGCCGCATGTTTGGTGATGATATGTATA 669
||| || || | || || || |||||| ||||| |||||||||||||| |||||| |
Sbjct 552 TGGCGGCGGAAGAGGTGGTACA-AGATTCTCTAGCAGCATGTTTGGTGATAATATGTTTG 610
Query 670 CCTCTTTTGGTGAAGGAGCAGGTGGTGGAGGAGCTATGcatcatcatcaccatcatcatc 729
| ||||| || ||||||| ||| ||||| | | || | | | || |
Sbjct 611 CTTCTTTCGGCGAAGGAGGAGGCGGTGG-TG-G---TG-----GC-T---C--GAT--GC 652
Query 730 atcaCGGTGCAGCTAGGAAAG-TGGCTCCTATCGAGAACAAGTTGCCTTGTAGCCTTGAA 788
||||||||| ||||||||| | | ||||||||||| ||||||||||||||||||||||||
Sbjct 653 ATCACGGTGGAGCTAGGAAGGCT-GCTCCTATCGAAAACAAGTTGCCTTGTAGCCTTGAA 711
Query 789 GATCTCTACAAAGGAACTACCAAGAAGATGAAGATCTCCAGGGAGATTG-TAGATGTCAG 847
||||| ||||||||||| ||||| ||||||| ||| || |||||||||| | ||||||||
Sbjct 712 GATCTTTACAAAGGAACCACCAAAAAGATGAGGATTTCTAGGGAGATTGCT-GATGTCAG 770
Query 848 CGGCAAGGCAATGCAAGTGGAAGAGATTCTAACGATTGGA-GTGAAACCCGGGTGGAAGA 906
|||||| | ||||| |||||||||||| | || |||| | |||||||| || |||||||
Sbjct 771 TGGCAAGACGATGCAGGTGGAAGAGATTTTGACCATTG-ATGTGAAACCAGGATGGAAGA 829
Query 907 AAGGCACAAAGATCACATTCCCAGAGAAAGGCAATGAGCATCCAGGTGTGATTCCAGCGG 966
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 830 AAGGCACAAAGATCACGTTCCCAGAGAAAGGCAATGAGCAACCCGGTGTGATTCCAGCGG 889
Query 967 ATCTAGTCTTCATCATTGACGAGAAACCCCATCCAGTGTTT-ACCCGTGAGGGCAACGAC 1025
|| |||||||||| || |||||||| || || || || ||| || || ||||| ||||||
Sbjct 890 ATTTAGTCTTCATAATCGACGAGAAGCCTCACCCGGT-TTTCACTCGAGAGGGTAACGAC 948
Query 1026 TTGATTGTCACACAGAA-AGTCTCACTAGCTGATGCCTTAACAGGCTACACTGCAAACAT 1084
| || ||||||||||| | ||||||| | ||| ||||| || || ||||| | ||| |
Sbjct 949 CTCATAGTCACACAGAAGA-TCTCACTTGTTGAGGCCTTGACTGGTTACACAGTGAACCT 1007
Query 1085 AACGACCCTTGATGGTCGTACACTTACAATCCC-GATCACAAACGTGATCCATCCAGAGT 1143
|| || ||||||||||| | ||| ||||| || | |||| |||||| ||||||| ||||
Sbjct 1008 GACTACTCTTGATGGTCGGAGACTGACAATTCCAG-TCACCAACGTGGTCCATCCCGAGT 1066
Query 1144 ATGAAGAGGTGGTTCCTAAAGA-GGGAATGCCACTT-CAAAAAGATCAGACGAAGAAAGG 1201
| || || ||||| || || || |||| ||||| || |||||||| ||||| |||| |||
Sbjct 1067 ACGAGGAAGTGGTACCGAAGGAAGGGA-TGCCA-TTGCAAAAAGACCAGACTAAGAGAGG 1124
Query 1202 GAACTTAAGGATCAAGTTCAATATCAAGTTTCC-AGCAAGATTAAC-TGCAGAACAGAA 1258
||||| |||||||| || || |||||||| || | |||| ||||| | |||| |||||
Sbjct 1125 TAACTTGAGGATCAAATTTAACATCAAGTTCCCTA-CAAGGTTAACCT-CAGAGCAGAA 1181
> AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3:2710154-2711895
REVERSE LENGTH=1304
Length=1304
Score = 211 bits (114), Expect = 1e-53
Identities = 206/249 (83%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 228 AAGAGAGAAGACGAAGAAGGT-GAG--ATGGGAGTGGATTATTACAAGG-TGTTACAGGT 283
|||| |||||| | || |||| || ||||| || ||||||||||||| | || |||||
Sbjct 59 AAGA-AGAAGAAGGAGGAGGTATAGCAATGGGGGTCGATTATTACAAGGTTCTT-CAGGT 116
Query 284 TGAT-AGAAGCGCTAACGACGATGACCTT-AAGAAAGCTTATAGAAAACTCGCTATGAAA 341
||| ||| || || ||||| || ||| |||||||||||| | |||||||| |||||
Sbjct 117 GGATCGGAA-TGCGAAAGACGACGA-CTTGAAGAAAGCTTATCGCAAACTCGCCATGAAG 174
Query 342 TGGCATCCCGACAAGAACCCTAACAACAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATC 401
|||||||| ||||||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 175 TGGCATCCAGACAAGAACCCTAACAACAAAAAAGACGCCGAAGCCAAATTCAAGCAGATC 234
Query 402 TCTGAAGCCTACGATGTTCTT-AGCGATCCTCAAAAGAGAGCGGTATATGATCAATACGG 460
|| ||||| ||||||||| || || ||||||||||||||||| | ||||||||||| ||
Sbjct 235 TCCGAAGCTTACGATGTT-TTGAGTGATCCTCAAAAGAGAGCCATCTATGATCAATATGG 293
Query 461 TGAGGAAGG 469
|| |||||
Sbjct 294 AGAAGAAGG 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5