BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491942
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28300.1 | Symbols: | Protein of unknown function (DUF1421)... 2632 0.0
> AT4G28300.1 | Symbols: | Protein of unknown function (DUF1421)
| chr4:14014653-14017068 FORWARD LENGTH=1943
Length=1943
Score = 2632 bits (1425), Expect = 0.0
Identities = 1622/1716 (95%), Gaps = 17/1716 (1%)
Strand=Plus/Plus
Query 99 TTTCTCAATCTGGTTTCCAGTCTTCGGATTCAATGGCGTCTGGATCTTCGGGTCGGGTCA 158
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTTCTCAATCTGGTTTTCAGTCTTCGGATTCAATGGCGTCTGGATCTTCGGGTCGGGTCA 235
Query 159 ACTCAGGATCTAAAGGTTTCGATTTTGGCTCCGATGATATCCTTTGCTCTTACGATGACT 218
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 236 ACTCAGGATCCAAAGGTTTCGATTTTGGCTCCGATGATATCCTTTGCTCTTATGATGACT 295
Query 219 ACACCAACCAGGACTCCTCTAATGGTCCTAACTCTGATCCTGCGATCGCTGCTGCCAACT 278
|||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 296 ACACCAACCAAGACTCCTCTAATGGTCCTCACTCCGATCCTGCGATCGCTGCTTCCAACT 355
Query 279 CCAACAAGGAATTCCACAAAACTAGGATGGCAAGGTCTTCGGTTTTCCCTACAAGCTCTT 338
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 356 CCAACAAGGAATTCCATAAAACAAGGATGGCAAGGTCTTCGGTTTTCCCTACAAGCTCTT 415
Query 339 ACAGTCCACCAGAGGACTCTTTGAGCCAAGACCTTACTGACACTGTCGAAAGAACCATGA 398
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 416 ACAGTCCACCAGAGGATTCTTTGAGCCAAGACATTACTGACACTGTCGAAAGGACCATGA 475
Query 399 AGAAGTATGCAGATAACATGATGCGCTTTCTTGAAGGTATCAGCTCACGCTTGTCCCAGC 458
||| |||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 476 AGATGTATGCTGATAACATGATGCGCTTTCTTGAAGGCCTCAGTTCACGCTTGTCTCAGC 535
Query 459 TTGAACTCTACTGCTACAACCTTGATAAGACAATTGGAGAAATGAGATCGGAGTTGACTC 518
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 TTGAACTCTACTGCTACAACCTTGATAAGACCATTGGAGAAATGAGATCGGAGTTGACTC 595
Query 519 ATGAACACGAGGAGGCTGATGTGAAGCTTAGATCTCTGGACAAACATCTTCAAGAGGTGC 578
||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 ATGCACATGAGGATGCCGATGTGAAGCTTAGATCTCTCGACAAACATCTTCAAGAGGTGC 655
Query 579 ATAGGTCTGTCCAGATTCTCAGAGACAAACAAGAGCTAGCAGATACTCAAAAAGAGCTAG 638
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 ATAGGTCTGTCCAGATTCTTAGAGACAAACAAGAGCTAGCAGATACTCAGAAAGAGCTAG 715
Query 639 CGAAACTTCAACTTGTGCAGAAAGAGTCATCTTCTTCTTCTCACTCTCAACATGGTGAGG 698
|||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 716 CGAAGCTACAACTTGTGCAGAAAGAGTCATCTTCGTCGTCTCACTCTCAACATGGTGAGG 775
Query 699 ACCGGGTCGCCACTCCTGTTCCAGAGCCTAAGAAGAGCGAGAACACCTCAGATGCACACA 758
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 776 ACCGTGTCGCCACTCCTGTTCCAGAGCCTAAGAAGAGCGAGAACACCTCTGATGCACACA 835
Query 759 ACCAGCAGCTTGCACTTGCTTTGCCTCACCAAATAGCTCCACAGCCACCA-GTGCAGCCG 817
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 836 ACCAGCAGCTTGCACTTGCTTTGCCTCACCAAATAGCCCCACAGCCA-CAGGTGCAGCCG 894
Query 818 CAGCCGCAGCCACAGCAACAGCAGTATTACATG---CCTCCTCCTACACAGCTTCAAAAC 874
||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 895 CAGCCACAGCCACAACAACATCAGTATTACATGCCTCCTCCTCCTACACAGCTTCAAAAC 954
Query 875 ACACCTGCATCAGTGCCTG-TTCTTACTCCACCATCACAACCTCAAGCACCACCAGCGCA 933
||||||||| | ||||| | ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 955 ACACCTGCACCGGTGCCCGTTTC-TACTCCACCATCACAACTTCAAGCACCACCAGCGCA 1013
Query 934 GAGTCAGTTCATGCCCCCACCTCCTGCTCCATCTCACCCAAGCTCAGCCCAAACTCAGTC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GAGTCAGTTCATGCCCCCACCTCCTGCTCCATCTCACCCAAGCTCAGCCCAAACTCAGTC 1073
Query 994 ATTCCCGCAGTACCAGCAAAACTGGTCACCCCAACCACAGGCCAGGCCACCGTCAAGTGG 1053
||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 1074 ATTCCCGCAGTACCAGCAAAACTGGCCACCCCAACCACAAGCCAGGCCACAGTCAAGTGG 1133
Query 1054 AGGCTACCCAACATACTCGCCTGCACCACCAAGCAACCAATTGCCAGTAGAATCGTTGCC 1113
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1134 AGGCTACCCAACATACTCGCCTGCACCACCAGGCAACCAACCGCCAGTAGAATCGTTGCC 1193
Query 1114 AAGCAGCATGCAGATGCAATCACCATACTCTGGACCTCCTCAACAGTCTATGCAAGCTTA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AAGCAGCATGCAGATGCAATCACCATACTCTGGACCTCCTCAACAGTCTATGCAAGCTTA 1253
Query 1174 CGGATACGGTGC---ACCACCACCACAGGCTCCTCCTCAGCAGACAAAGATGTCTTATAT 1230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1254 CGGATACGGTGCTGCACCACCACCACAGGCTCCTCCTCAGCAGACAAAGATGTCTTACAG 1313
Query 1231 CCCCCAGACGGGCGACGGGTATCTACCCTCAGGACCTCCTCCTCCTGCCGGGTATGCCAA 1290
||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1314 CCCCCAGACTGGCGATGGGTATCTACCCTCAGGACCTCCTCCTCCTTCCGGGTATGCCAA 1373
Query 1291 TGCCATGTATGAAGGTGGGCGAATGCAATACCCACCACCTCAGCCGCAGCAGCAACAGCA 1350
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1374 TGCCATGTATGAAGGTGGGCGAATGCAATACCCACCACCTCAGCCGCAGCAGCAGCAGCA 1433
Query 1351 GCAAGCCCATTACTTGCAAGGTCCACAAGGTGGTGGATACGCTCCCCAGCCGCACCAGTC 1410
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1434 GCAAGCCCATTACTTGCAAGGTCCACAAGGTGGTGGATACTCTCCCCAGCCGCACCAGGC 1493
Query 1411 AGGTGGCGGTAACACTGGTGCACCACCTGTGTTGAGATCAAAATACGGTGAACTTATAGA 1470
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1494 AGGTGGCGGTAACATTGGTGCACCACCTGTGTTGAGATCAAAATACGGTGAACTGATAGA 1553
Query 1471 GAAGCTAGTGAGCATGGGTTTCAGGGGAGACCATGTGATGGCCGTGATTCAGCGGATGGA 1530
|||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 1554 GAAGCTAGTGAGCATGGGTTTCAGAGGAGACCATGTCATGGCTGTTATTCAGCGGATGGA 1613
Query 1531 AGAGAGTGGCCAACCCATCGACTTCAACGCCCTCCTCGACAGATTGAGTGGGCAGTCCTC 1590
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1614 AGAGAGTGGCCAACCCATCGACTTCAACACCCTCCTCGACAGATTGAGTGGGCAGTCCTC 1673
Query 1591 AGGAGGACCTCCCAGAGGATGGTGAAGCCATA--TCCCCTTCTACTAGTGTATCTTTCAC 1648
||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||
Sbjct 1674 AGGAGGACCTCCCAGAGGATGGTGATGCCATGGCTCCCCT-CTACTTGTGTATCTTTCAA 1732
Query 1649 AATAAAACTGCGCTTTCTCTTCACCCCTTCTCTTTACTTTACTCTATAGAGGCCCTAGTT 1708
|||||||||| |||| |||||| | ||| |||||| | ||||||||||||||||||||||
Sbjct 1733 AATAAAACTGTGCTTCCTCTTC-CTCCTCCTCTTTGCGTTACTCTATAGAGGCCCTAGTT 1791
Query 1709 TTATTGGGCCCAATAGATTGGGTCAGTTGTGTATTGTTTATGGGACTCAATTTATATTTC 1768
|||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||
Sbjct 1792 TTATTGGGCCCAATAGATTGGGTCTGTTGTGTATTGTT-ATAAGACTCAATTTATATTTC 1850
Query 1769 CTTaaaaaaaGCCGTATTATTGGTGTATGTGTTACT 1804
||||||| ||| ||||||| ||||||||||||||
Sbjct 1851 TTTAAAAA--GCCTTATTATTTGTGTATGTGTTACT 1884
Score = 113 bits (61), Expect = 5e-24
Identities = 80/88 (91%), Gaps = 5/88 (6%)
Strand=Plus/Plus
Query 1 aaaaaaaaCGTTTTTCTCCTGCTTGCTTGCTTCTTCTCTTTGCTTGCGTTTTCTCAAAGG 60
|||| |||||||||| | | | |||||||||| ||||||||||||||||||||||||||
Sbjct 39 AAAACAAACGTTTTT-T--T-CCTGCTTGCTTC-TCTCTTTGCTTGCGTTTTCTCAAAGG 93
Query 61 TTCGAAGAAAACGAAGAACCAAGCTTTT 88
||||||||||||||||||||| ||||||
Sbjct 94 TTCGAAGAAAACGAAGAACCACGCTTTT 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5