BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491944
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 592 1e-168
> AT4G28290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to
45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:14011844-14012583 REVERSE
LENGTH=550
Length=550
Score = 592 bits (320), Expect = 1e-168
Identities = 470/537 (88%), Gaps = 31/537 (6%)
Strand=Plus/Plus
Query 1 TTTTCCCACATTTTTCTCCCATCTGCCTACGGTTCCAGAtttttttttATATTTAACACA 60
|||||||||||||||||| ||||||||||||||| |||| |||| ||| || ||||||||
Sbjct 4 TTTTCCCACATTTTTCTCTCATCTGCCTACGGTTGCAGA-TTTTATTT-TA-TTAACACA 60
Query 61 GACaaaa-aaaaaaaaGTATAAAAAGAGTCCACAAATTTGGGAAA-TTTCAAGTTCCAGA 118
|| |||| ||||||||||||||| ||||||||| ||||||||||| ||| ||| | || |
Sbjct 61 GA-AAAACAAAAAAAAGTATAAACAGAGTCCACGAATTTGGGAAAGTTT-AAGAT-CA-A 116
Query 119 GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCCGCTTCCGCCACCGCC 178
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 117 GACATGAAGAAAACTGGAATCATCGCAGCCTCCATCTCTGTCGCGGCTTCTGCCACGGCG 176
Query 179 ATCTCCGCCGGCTCCACCAACACCTTCGTATCCTTCTCTTCGCCGGAATCCAAATAT-TC 237
|||||||||||||| |||||||||| ||| || |||||||||||||||| | ||| | ||
Sbjct 177 ATCTCCGCCGGCTCTACCAACACCTCCGTGTCATTCTCTTCGCCGGAAT-CTAATCTCTC 235
Query 238 CCTTCAGGATTCAAAGGAAAAACAGAGGAAGAAGAAGAGTTCGTCAGAAGATGGGGGAGA 297
| |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 236 TCGTCAGGAGGCAAAGGAAAAACAGAGGAAGAAGAAGGGTTCGTCGGAAGATGGGGGAGA 295
Query 298 AGAAAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA 357
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TGAGAAGTTTGCTCCAAGGTTTGATGGGTTACGATTCATCGAGACGCTTGTTACTGCTCA 355
Query 358 CCGATAACATTTGCATTATTCTGATTTCTAAGGTTTCTTATTGTTTACCC-ATCTGATTA 416
||||||||||||||||| ||||||||| ||||| |||||||||||||||| || ||||||
Sbjct 356 CCGATAACATTTGCATTGTTCTGATTTGTAAGGGTTCTTATTGTTTACCCCATTTGATTA 415
Query 417 ACTACAAAGAATTACAGATTTAAAGTT-CGGGtttttt-ttG-T---A-A-C--T-TTG- 464
|||||||||| |||| ||||| ||||| || |||||| || | | | | | |||
Sbjct 416 ACTACAAAGATTTACTGATTTTAAGTTTCGTTTTTTTTCTTTCTTTCACATCACTATTGT 475
Query 465 ------G-CTTAAACTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCGTGTT 514
| |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 476 AACTTCGGCTTAAAGTGTACCACCAAGACAAGAGGCATGATTTATGAGGTTCATGTT 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5