BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491962 Length=1156 Score E Sequences producing significant alignments: (Bits) Value AT4G28140.1 | Symbols: | Integrase-type DNA-binding superfamil... 1493 0.0 > AT4G28140.1 | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:13974691-13975908 REVERSE LENGTH=1218 Length=1218 Score = 1493 bits (808), Expect = 0.0 Identities = 972/1047 (93%), Gaps = 27/1047 (3%) Strand=Plus/Plus Query 105 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTGGATCAT 164 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 123 AAGATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTTGATCAT 182 Query 165 TCTTTT---GGAGAAGCTTCTTCCACGTCCCCAAGGTCTATGAAGAAGATGAAGAGTCCT 221 |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 183 TCTTTTGGAGGAGAAGCTTCTTCCACGTCCCCAAGATCTATGAAGAAAATGAAGAGTCCT 242 Query 222 AATCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGGGGCTTTCCCT 281 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 243 AGTCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGAGGCTTTCCCT 302 Query 282 TTTTCTCTCGATCCAACAATTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGG-- 339 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 303 TTTTCTCTCGATCCAACACTTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGGTA 362 Query 340 -TTGAGCAACAACATGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCGTTTAGTCCT 398 ||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 363 CTTGAGCAACGACAAGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCCTTTAGTCCT 422 Query 399 ---CAACAAC-A-A-CAGCAGCAGTATATGGCCAAGTACTGGAGTGACACATTGAATTTG 452 ||||||| | | |||||||||||||||||| ||||||||||||||||||||||| || Sbjct 423 CAACAACAACAACAGCAGCAGCAGTATATGGCCCAGTACTGGAGTGACACATTGAATCTG 482 Query 453 AGTCCAAGAGGAAGAATGATGAT--T-ATGAGCCAAGAAACTGTTCAACCCTATAGCGCA 509 ||||||||||||||||||||||| | |||||||||||| |||||||||| || | |||| Sbjct 483 AGTCCAAGAGGAAGAATGATGATGATGATGAGCCAAGAAGCTGTTCAACCTTACATCGCA 542 Query 510 ACCAAGCTGTACAGAGGAGTAAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 569 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 543 ACGAAGCTGTACAGAGGAGTGAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGT 602 Query 570 AAGCCACGAAGCAGGGCACGGCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 629 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 603 AAGCCACGAAGCAGGGCACGTCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCC 662 Query 630 ATGGCCTACGACCGCCAAGCCTTCAAATTGAGG-GGCCACAGCGCAACACTGAACTTCCC 688 ||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||| Sbjct 663 ATGGCCTACGACCGCCAAGCCTTCAAATT-ACGAGGCCACAGCGCAACACTGAATTTCCC 721 Query 689 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCAGATCAGAAGGA 748 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 722 GGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCGGATCAGAAAGA 781 Query 749 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAAAGCAAGGAACTAGCGGTCATTGA 808 |||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 782 ACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAGAGCAAGGAACTACCGGTGATTGA 841 Query 809 TGTTGGGAGAGACGAAGGCATGGCTGAGGCGTGGTACAATGCGGTGACATCGGGTTGGGG 868 |||||||||||| ||||| ||||||||||| ||||||||||| | |||||||| ||||| Sbjct 842 TGTTGGGAGAGAGGAAGGTATGGCTGAGGCATGGTACAATGCCATTACATCGGGATGGGG 901 Query 869 TCCTGAAAGTCCCCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCA---GAAAGCTC 925 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 902 TCCTGAAAGTCCTCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCATCAGAAAGCTC 961 Query 926 AtcttcttcttctctctcttGTCCCATGAGACCTTTCTTTTGAAAAAGGTTATAAGCCCA 985 |||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||| |||| Sbjct 962 ATCTTCTTCTCCTCTCTCTTGTCCTATGAGGCCTTTCTTTTGAAAAAGTTTATAAACCCA 1021 Query 986 CATTGT-T-GTAGGTTGTAGTTTAGGGTTCTACTCATTGGCATTTGGATGGAGACAGTTT 1043 |||||| | ||||||| |||||||||||| | ||||||||||||||||||||| || ||| Sbjct 1022 CATTGTGTTGTAGGTTATAGTTTAGGGTTATGCTCATTGGCATTTGGATGGAGGCAATTT 1081 Query 1044 TTGTGATCTCCCACTTC-AC-ACAT--CAGTCATTATATGTGTCTACCTTCTCTCTGTAT 1099 ||||||||||||| ||| || |||| ||||||||||||||||||||||| ||||||||| Sbjct 1082 TTGTGATCTCCCA-TTCCACCACATATCAGTCATTATATGTGTCTACCTTTTCTCTGTAT 1140 Query 1100 TTCTATCGTCATCATTGATTTTAATAT 1126 ||||||| | ||||||| ||||| ||| Sbjct 1141 TTCTATCATTATCATTGTTTTTATTAT 1167 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56726615850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5