BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491965
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28100.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1993 0.0
> AT4G28100.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: anchored to plasma membrane, anchored to membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
14 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965108-13966860
REVERSE LENGTH=1270
Length=1270
Score = 1993 bits (1079), Expect = 0.0
Identities = 1201/1260 (95%), Gaps = 7/1260 (1%)
Strand=Plus/Plus
Query 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTTCACAATAGTCCTTTGGACAGAACAAAAGAGAGAGAAGATAGTGAATAATGGAA 60
Query 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTAAAAAGACTCAGATTTGAGAAAGCGTTTCA 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 61 GGCTGCTTTTCTTCGTGAATCTCAGAATCTTAAAAGACTCAGATTTGAGAAAACGTTTCA 120
Query 121 ATTTCTAAATCCATTtctct--ctctctctctAGCCATTTACAATGAAGAAGAGTCTCAC 178
|| ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||
Sbjct 121 ATATCTAAATCCATTTCTCTCCCTCTCTCTTTAGCCATTTAGAATGAAGAAAAGTCTCAC 180
Query 179 TTTACTCAtcctcctcctctgttctctcctctcctccACCGTCTTGAGCAACCTACTCGC 238
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCTACTCATCCTCCTCCTCTGTTCTCTCCTCTTCTCCACCGTCTTGAGCAACCTACTCGT 240
Query 239 CGAACCGGTCCAACCCAACACTGTACCGGCATTCCCCGTCGAAACCCAAGCTCAAAGCTG 298
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 241 CGAACCGGTCCAACCCAACACCGTACCAGCCTTCCCCGTCGAAACCCAAGCTCAAAGCTG 300
Query 299 CCGACTTGACCTCTCCAACGAGCTCTTTGGTGGTGTCAACGAAGCTTGCGGAAGAAACCT 358
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 301 CCGACTTGACCTCTCCAACGAGCTATTCGGTGGCGTCAACGAAGCTTGCGGAAGAAACCT 360
Query 359 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGACCGGAGTCGATGTTGCCCTGTTTTAGCCGCTTGGCTCTTCGCAGCTCACGCTCGCTC 420
Query 419 TGCTCTCCTGCTCCCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 478
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCTCTCCAGTTACCAGCTCCTGCTCCAACGCCGGAATCTTCTGATCCCGACGAACCCAT 480
Query 479 GAAGCCTGACGACTCACAGAAGTGCGTCAACACATTGCAAAGCGCGCTTTTGACCAAACA 538
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 481 GAAGCCTGACGACTCTCAGAAGTGCGTCAACACATTGCAAAGTGCGCTTTTGACTAAACA 540
Query 539 AATCAAGATCCCTCAGCCTAATTCAAGCTGCGATGCAATCTTGTGCTTCTGTGGCATTCG 598
|||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||||
Sbjct 541 AATCAAGATCCCTCAGCCTAATTCTAGCTGTGACGCAATCTTGTGCTTCTGTGGTATTCG 600
Query 599 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCCACCAGATTAGCTCACTCTCTTGTCCCGCCGCTTTCAATGTCTCCTCCGGCTTCAA 660
Query 659 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGTCGGAATTCTTCGTA 718
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 661 AAACGCAACTCCGACCGCCGCCGTGAAGAATCTTGAAAAAGAATGCCGGAACTCTTCTTA 720
Query 719 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAATGTTAGAGGAGGAAACAA 778
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 721 CTCCGGTTGTACCAGATGCCTCGGTGCTCTTCAAAAGCTAAAGGTAAGAGGAGGAAACAA 780
Query 779 GAAGACAACAACAGAGAGAGGGAGTAAGATGATGAGCAAAGACTGCAAGCTCATGGGACT 838
||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 781 GAAGACAACAACAGAGAGAGGGACTAAGATGATGAGCAAAGATTGCCAGCTCATGGGACT 840
Query 839 CACATGGCTACTGGCTCGTAACAAAACGGCATACATTCCCACCGTTTCAGCTGTGTTAAG 898
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 841 CACATGGCTACTAGCTCGTAACAAAACGGCATACATTCCCACTGTTTCGGCTGTGTTAAG 900
Query 899 AGCCATTATGTATAGTCCACACCCTCCTCATCTCAACAAGTGCAGTCCTGACCAAGAGAA 958
||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 901 AGCTATTATGTATAGTCCACACCCACCTCACCTCAACAAGTGTAGTCCTGACCAAGAGAA 960
Query 959 CATGCCTTTAGCCGTTGACTCTCTACAGTTTGAGAGGAGCCTCTCTTCATCATCTCATCT 1018
|||||||||||| |||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct 961 CATGCCTTTAGCAGTTGACTCTCTACAGTTTCAAAAGAGCTTCTCTTCATCATCTCATCT 1020
Query 1019 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTACCGGTCTCTTTCTACTGTGAtt 1078
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1021 TTTTGGGGTTTTACCGTTTTTACCCTTAGTCCTTTGTATCTTTCTCTTTCTACTGTGATT 1080
Query 1079 tttct-t-tattttttGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1136
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTTTTCTGTATTTTTTGGTCGGGAGGGGTAAAGAGAGTCACGTGAAGCTACAAGACAGTT 1140
Query 1137 ATGTGTGTATGTAAATGCTGTGCTCTTCTTTTGGTTCTGCAAACTCTTAACCCTCATTTT 1196
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1141 ATGTGT--ATGTAAATGCTGTGCTCTTTTTTTGGTTCTGCAAACTCTTAACCCTCATTTT 1198
Query 1197 T-GGTTTTAACTGTGTTTTGTCCAATTTAACACTTTGTCCGAGGTCTTGAAATTTTAAAA 1255
| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1199 TTGGTTTTAACTGTGTTTTGTCCCATTTAACACTTTGTACGAGGTCTTGAAATTTTAAAA 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5