BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg491980 Length=634 Score E Sequences producing significant alignments: (Bits) Value AT4G28025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 743 0.0 > AT4G28025.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13935604-13937508 REVERSE LENGTH=847 Length=847 Score = 743 bits (402), Expect = 0.0 Identities = 508/557 (91%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 1 ATATAAAACAGAGACGAAGAACGAACGCTT-CGAAAATATGAAAGGCTTAGAAATGGTGG 59 |||||||||||||||| | || |||| || |||||||| |||||||||||||||||||| Sbjct 94 ATATAAAACAGAGACG-A-AA--AACG-TTGCGAAAATACGAAAGGCTTAGAAATGGTGG 148 Query 60 TGACGTCTTTCTCTTCACCGCCGTCTATCTTCTTCTT-CCATGGAGCTGATCCTCAGCTT 118 ||||||||||||||||| ||||| ||||||||||||| || |||||||||| ||||| || Sbjct 149 TGACGTCTTTCTCTTCAGCGCCGCCTATCTTCTTCTTACC-TGGAGCTGATGCTCAGTTT 207 Query 119 ACTTCAACCAATGGACGCTTTGCGACTCCTTCCTCTCCTCTCGTAAAGGGACTAAGAAGA 178 |||| |||||||| | ||||| | |||||||||| ||||||||||||||||||||||| Sbjct 208 TCTTCTTCCAATGGAAGGTTTGCTATTCCTTCCTCTTCTCTCGTAAAGGGACTAAGAAGA 267 Query 179 CACCAAGATGCAAAGTTGGTGGGAAACAGAGCCAGAGTTGGAGTAGTTCGAGTCCTAGCA 238 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 268 CACCAAGATGCAAAGTTGGTGGGCAACAGAGCCAGAGTTGGAGTAGTACGAGTCCTAGCG 327 Query 239 AACCCAAATGTA--T-CTCCTCCTCCTCCAGGAAAAGCAAAGGTaaaaaaaGAGGTAATC 295 |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 AACCCAAATGTATCTCCTCCTCCTCCTCCAGGAAAAGCAAAGGTAAAAAAAGAGGTAATC 387 Query 296 ATGGTAGACCCTCTTGAGGCCAAGCGGTTAGCTGGCAAGCAAATGGAAGAGATTAAAGGC 355 |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| Sbjct 388 ATGGTAGACCCTCTTGAGGCTAAGCGGTTAGCTAGTAAGCAAATGGAAGAGATTAAAGGC 447 Query 356 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATAAACGGAGCATGGGCAATCATA 415 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 448 AGAGAAAAGCAACAGAGAAGGCGTGAAATAGAGGCTATTAACGGAGCATGGGCAATCATA 507 Query 416 GGACTCACGATAGGGCTGGTGATCGAAGCCCAAACAGGGAAGGGTATCCTGGCTCAGTTG 475 ||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 508 GGACTCATGATAGGGCTGGTGATCGAAGCTCAAACGGGGAAGGGTATTCTGGCTCAGTTG 567 Query 476 GCTGGTTATTGGTCTGCGGTTTTGCATCTATTTGTTCCATCAACATAGAATGAAAAACTT 535 ||||||||||||||||| ||| | ||| | || ||||||||| ||||||||| || Sbjct 568 GCTGGTTATTGGTCTGCAGTTGTCCATTTGTTCACTCCATCAACTTAGAATGAA----TT 623 Query 536 GAGTTTCATTTGGTTTT 552 |||||||||||||||| Sbjct 624 AAGTTTCATTTGGTTTT 640 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30592595523 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5