BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492004
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27800.1 | Symbols: TAP38, PPH1 | thylakoid-associated phosp... 2126 0.0
> AT4G27800.1 | Symbols: TAP38, PPH1 | thylakoid-associated phosphatase
38 | chr4:13851862-13854191 REVERSE LENGTH=1418
Length=1418
Score = 2126 bits (1151), Expect = 0.0
Identities = 1329/1413 (94%), Gaps = 20/1413 (1%)
Strand=Plus/Plus
Query 1 tttttttACGAAAATCCACGGCCACTAACCGT--A--A-A-------G-TTTTTCTCTTC 47
|||||||||||||||||||||||||||||||| | | | | |||||||||||
Sbjct 6 TTTTTTTACGAAAATCCACGGCCACTAACCGTAAAGGACACTCTTTTGATTTTTCTCTTC 65
Query 48 TTCTACTTAAATCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 107
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TTCTACTTAACTCGCTTTGCCTGACTCACTGAGTCATGGCGCTTCTGAGGCCGCATCTTC 125
Query 108 ATCGCTTTCACTCCAACACTCTCCGTTACTCCGGCTCTCCTTCCGCCGACTCTGGCGGTG 167
||||||||||||||||||||||||| |||| | || ||||||||||||| |||||||||
Sbjct 126 ATCGCTTTCACTCCAACACTCTCCGCCACTCAGCCTATCCTTCCGCCGACGCTGGCGGTG 185
Query 168 GCCTTGTCGTCTATCCCACGTATGGTGGTCACCGTTGCACCGCGATTGCGATCGACGCGC 227
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
Sbjct 186 GCCTTGTCGTCTATCCCACGTATGGTCGTCACCGTTGCTCCGCGATTGCGATCGACGCTC 245
Query 228 CGTCGTCTCTCACTGGCGTGACGCCGATTCGATGGGGTTACACGAGCGTTCAAGGATTCC 287
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 246 CGTCGTCTCTGACTGGCGTGACGCCGATTCGTTGGGGTTACACGAGTGTTCAAGGATTCC 305
Query 288 GAGATGAGATGGAGGACGACATCGTTATCCGTTCCGATGCTCTTGATAGCTTCTCCTACG 347
||||||||||||| ||||||||||| |||||||| |||||| | ||||||||||||||||
Sbjct 306 GAGATGAGATGGAAGACGACATCGTAATCCGTTCTGATGCTGTCGATAGCTTCTCCTACG 365
Query 348 CCGCGGTTTTCGACGGCCACGCTGGATCGTCGTCTGTCAAATTCCTCAGGGAAGAGCTGT 407
| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 366 CAGCGGTCTTCGACGGCCACGCTGGGTCGTCCTCTGTCAAATTCCTCAGGGAAGAGCTGT 425
Query 408 ATAAGGAGTGTGTTGGGGCATTGCAAGCTGGATCGTTGTTGAAAGGAGGTGATTTCGCAG 467
|||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 426 ATAAAGAGTGTGTTGGTGCATTGCAAGCTGGATCGTTGTTGAATGGAGGCGATTTCGCAG 485
Query 468 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTGGATCGTAATTTGCTCAAATGGC 527
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 486 CAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTTGACCGCAATTTGCTCAAATGGC 545
Query 528 TAGAAGCAAATGGTGGCGAAGAAGACGAATCAGGTTCAACAGCCACTGTAATGTTCATCA 587
||||||| || |||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 546 TAGAAGCTAACGGTGACGAAGAAGATGAATCAGGTTCAACAGCCACTGTAATGATCATCA 605
Query 588 GAAATGATGTTTCTTTCATTGCGCATATTGGAGATTCGTGTGCAGTCTTATCTCGGTCTG 647
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 606 GAAATGATGTTTCCTTCATTGCTCATATTGGTGATTCGTGTGCAGTCTTATCTCGATCTG 665
Query 648 GACAAATCGAGGAATTGACTGATTCTCACCGTCCATATGGAAGCAGTAAAGCAGCTATTC 707
| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 666 GGCAAATCGAGGAATTGACTGATTATCACCGTCCATATGGAAGCAGTAGAGCAGCTATTC 725
Query 708 AGGAAGTGAAAAGGATCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 767
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGGAAGTGAAAAGGGTCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAG 785
Query 768 ACATAGCTGTATCCCGTGCTTTTGGTGACATCCGGTTCAAGACAAAGAAGGATGAAATGT 827
||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 786 ACATAGCTGTATCTCGTGCTTTTGGTGACATCCGGTTTAAGACAAAGAAGAATGATATGT 845
Query 828 TAAAGAAGGGTGTTGATGAAGGAAGATGGACCGAGAAGTTTGTTTCGAGAATCGAGTTTA 887
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 846 TAAAGAAGGGTGTTGATGAAGGAAGATGGTCCGAGAAGTTTGTTTCCAGAATCGAGTTTA 905
Query 888 AAGGGGACATGGTAGTCGCAACTCCAGATATCTTCCAAGTACCTCTTACTTCTGATGTGG 947
||||||||||||| || || |||||||||||||||||||||||||| || ||||||||||
Sbjct 906 AAGGGGACATGGTTGTGGCGACTCCAGATATCTTCCAAGTACCTCTGACATCTGATGTGG 965
Query 948 AATTCATTATTTTGGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1007
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AATTCATTATTTTAGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTA 1025
Query 1008 GTTATGTTAGGGATCAGCTTCGGAAACAT-GGAA-----ATCTTGCTTGTGAATCTCTTG 1061
||||||||||||||||||| ||||||||| |||| | |||||||||||||||||||
Sbjct 1026 GTTATGTTAGGGATCAGCTCCGGAAACATGGGAATGTGCAGCTTGCTTGTGAATCTCTTG 1085
Query 1062 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATCAGCATCATTATTGCTGATCTAG 1121
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1086 CGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATTAGCATCATTATTGCTGATCTAG 1145
Query 1122 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTC 1205
Query 1182 AGGCTGCAGCGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AGGCTGCAACGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTT 1265
Query 1242 AAGTGAATTGAACATTCGATCTCTTTCTTTAGTGTATATAAAACATGTAACTATGTCTAA 1301
||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1266 AAGTGAATTGAACATTCTATCTCTTTCGTTAGTGTATATAAAACCTGTAACTATGTCTAA 1325
Query 1302 CACTCTAGTATTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAAAACCAGCTTT 1361
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1326 CACTCTAGTCTTCCCATAGAAATGGAGATATGAAGATACCTCACAAACAGAACCAGCTTT 1385
Query 1362 ATATTATTATATAACC-ACTTTCACAAGCGTTG 1393
||||||||||||| || ||||||||||||||||
Sbjct 1386 ATATTATTATATATCCCACTTTCACAAGCGTTG 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5