BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492022
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27650.1 | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1... 2082 0.0
AT3G58390.1 | Symbols: | Eukaryotic release factor 1 (eRF1) fa... 1201 0.0
> AT4G27650.1 | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1)
family protein | chr4:13803297-13807935 REVERSE LENGTH=1509
Length=1509
Score = 2082 bits (1127), Expect = 0.0
Identities = 1238/1290 (96%), Gaps = 14/1290 (1%)
Strand=Plus/Plus
Query 37 CTCTGCAGCAGCTTACGACCACTGACCCTTTTGATTCCGATTCAATCGAAAGACGACGGA 96
||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 61 CTCTGCAGCAGCTTACGACCACTGACCCTTTTGCTTTTGATTCAATCGATAGACGACGGA 120
Query 97 TACAAGTTCTCGCCATCGCCGAGCTGGAGCCGGAG--T---CTG-AG--CTG-A---GTA 144
||||||||||||| |||||||||| |||||||||| | ||| || ||| | |||
Sbjct 121 TACAAGTTCTCGCTATCGCCGAGCCGGAGCCGGAGTCTGAGCTGAAGCCCTGTATCTGTA 180
Query 145 ACTCTTCCAATAGTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGT 204
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTTCCAACAGTGGACATACCTTGAGAGATGAAGATCGTTCGCAGGGATTTTGTTCGT 240
Query 205 AATGGACCCGGAAGCGTTAAGATGGTGGCAGAGGACTCTGATGATTTGTGGTATGCTTAT 264
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 241 AATGGACCCGGAAGCGTTAAGATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTAT 300
Query 265 AACTTGATTGCGGTGGGAGATAGTGTAATGGCTGTCACTTTCAGAAAAGTTCAGAGAGAG 324
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAGAAAAGTTCAGAGAGAG 360
Query 325 ATACCTGGTGGGGGAAGAGACTCTGAACGTGTTAAACTGAAGTTGGAAGTACAAGTTGAG 384
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 361 ATACCTGGTGGGGGAAGAGACTCTGAACGTGTTAAACTGAAGCTGGAAGTACAAGTTGAG 420
Query 385 GAGGTGGACTATGACAAAGACGGATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGTGGACTATGACAAAGACGGATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAG 480
Query 445 AATGAGCACGTAAAGATTGGTGCATTCCATACTTTGGAGCTTGAGCTGAAACGACCTTTT 504
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AATGAGCACGTAAAGATTGGTGCATTCCATACTTTGGAACTTGAGCTGAAACGACCTTTT 540
Query 505 GTATTGAGAAAGGAAATTTGGGACTCAATGGCTCTTGATACACTCAAGCAGGCCTCAGAT 564
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GTGTTGAGAAAGGAAATGTGGGACTCAATGGCTCTTGATACACTCAAACAGGCCTCAGAT 600
Query 565 CCCGCTGCTAGTGCCGATCTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTC 624
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGCTGCTAGTGCTGATCTAGCTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTC 660
Query 625 CTTGTCGGCAGAAGTGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAG 684
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTGTGGGCAGAAGTGTGACAAGTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAG 720
Query 685 CATGGACCTGCAATTGCTGGTTACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATGGACCTGCAATTGCTGGTTACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTG 780
Query 745 CAGGCCTTTGTGAAACATGTTGACTTCAGTGTCGTTCGCTGTGCAGT-GATTGCAAGTCC 803
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 781 CAGGCCTTTGTGAAACATGTTGACTTCAGTGTCGTTCGCTGTGCAGTAG-TTGCAAGTCC 839
Query 804 CGGCTTCACAAAGGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAATT 863
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 CGGCTTCACAAAGGATCAGTTTCATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAACT 899
Query 864 GAGACCTATCATTGAGAACAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAG 923
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGACCTATTATTGAGAATAAATCACGTATAATATTGGTGCACACAAACTCTGGATATAG 959
Query 924 ACATAGCCTGGGCGAGGTTCTCCATGCTCCCAACGTGATGAATATGATCAAAGATACTAA 983
|||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 960 ACATAGCCTGGGTGAGGTTCTCCATGCCCCCAACGTGATGAATATGATAAAAGATACAAA 1019
Query 984 AGCAGCAAAAGAGGTTAAAGCTCTCAACGATTTTCACACCATGCTTTCAAATGATCCAGA 1043
||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| |||||
Sbjct 1020 AGCAGCAAAAGAGGTCAAAGCTCTCAATGATTTTCACAACATGCTTTCAACTGAACCAGA 1079
Query 1044 TCGGGCATGCTATGGACCAAAACACGTGGAAGTTGCTAATGAACGAATGGCAATCCAAAC 1103
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1080 TCGGGCATGCTATGGACCAAAACACGTGGAAGTTGCAAATGAACGAATGGCAATTCAAAC 1139
Query 1104 GCTTCTCATTACGGACGAGCTTTTCAGGAATTCTGACGTAAAAACAAGGAAGAAGTATGT 1163
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1140 GCTTCTCATAACGGACGAGCTTTTCAGGAATTCTGACGTGAAAACAAGGAAGAAGTATGT 1199
Query 1164 GAATTTGGTGGAGTCGGTGAAAGATTCGGGAGGAGAGGCTTTTATATTTTCGGCGATGCA 1223
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 GAATTTGGTGGAGTCGGTAAAAGATTCGGGAGGAGATGCTTTTATATTTTCGGCGATGCA 1259
Query 1224 TGTGTCAGGGGAACAATTGGCACAGCTGACTGGAATTGCAGCTCTTCTCAGGTTCCCTTT 1283
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 TGTGTCAGGAGAACAATTGGCACAGCTGACTGGAATAGCAGCTCTTCTCAGGTTCCCTTT 1319
Query 1284 ACCAGAACTCGAAGACATTGAGATGTAAAA 1313
||||||||||||||||||||||||||||||
Sbjct 1320 ACCAGAACTCGAAGACATTGAGATGTAAAA 1349
> AT3G58390.1 | Symbols: | Eukaryotic release factor 1 (eRF1)
family protein | chr3:21600030-21601217 REVERSE LENGTH=1188
Length=1188
Score = 1201 bits (650), Expect = 0.0
Identities = 867/972 (89%), Gaps = 14/972 (1%)
Strand=Plus/Plus
Query 347 CTGAACGTGTTAAACTGAAGTTGGAAGTACAAGTTGAGGAGGTGGACTATGACAAAGACG 406
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 224 CTGAACGTGTTAAACTTAAGCTAGAAGTACAAGTTGAGGAGGTGGACTATGACAAAGACG 283
Query 407 GATCTGTTTTGCGCATACGTGGCAAAAATATCCTGGAGAATGAGCACGTAAAGATTGGTG 466
| |||| |||||||||| || || |||||| ||||||| ||||| |||| ||||||||
Sbjct 284 GCGATGTTATGCGCATACGCGGGAAGAATATCATGGAGAACGAGCATGTAAGGATTGGTG 343
Query 467 CATTCCATACTTTGGAGCTTGAGCTGAAACGACCTTTTGTATTGAGAAAGGAAATTTGGG 526
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 344 CATTCCATACTTTGGAGATTGAGCTTAAACGACCTTTTTTATTGAGAAAGGAAAATTGGG 403
Query 527 ACTCAATGGCTCTTGATACACTCAAGCAGGCCTCAGATCCCGCTGCTAGTGCCGATCTAG 586
||||| ||||||||||||||||||||||||||||||||| || |||||||| ||| |||
Sbjct 404 ACTCACTGGCTCTTGATACACTCAAGCAGGCCTCAGATCTTGCAGCTAGTGCTGATTTAG 463
Query 587 CTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTCCTTGTCGGCAGAAGTGTGACAA 646
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 464 CTGTAGTTCTAATGCAAGAAGGACTGGCACAAATCTTCCTTGCCGGCAAAAGTGTAAAAA 523
Query 647 GTAGCCGTGCACGAATAGAAACATCCATTCCTAGGAAGCATGGACCTGCAATTGCTGGTT 706
|| || ||||||||||| ||||||| |||||| ||||||||||| ||| || |||||||
Sbjct 524 GTTGCGGTGCACGAATAAAAACATCGATTCCTTGGAAGCATGGAGCTGGAACGGCTGGTT 583
Query 707 ACGAGTCTGCTTTGAAGAAATTTTTTGAGAATGTTCTGCAGGCCTTTGTGAAACATGTTG 766
||||||| | |||||||||||| |||||||||||| |||| |||||| ||||||| ||||
Sbjct 584 ACGAGTCAGTTTTGAAGAAATTCTTTGAGAATGTTGTGCAAGCCTTTCTGAAACACGTTG 643
Query 767 ACTTCAGTGTCGTTCGCTGTGCAGTGATTGCAAGTCCCGGCTTCACAAAGGATCAGTTTC 826
|||||||||| ||||| || |||||||||||||||||||| || ||||| ||||||||||
Sbjct 644 ACTTCAGTGTGGTTCGATGCGCAGTGATTGCAAGTCCCGGGTTTACAAAAGATCAGTTTC 703
Query 827 ATCGCCACTTATTGTTGGAAGCAGAAAGAAGACAATTGAGACCTAT-CATTGAGAACAAA 885
|||||||| |||||||||||||||| |||||||| ||||||||||| | |||||||||||
Sbjct 704 ATCGCCACCTATTGTTGGAAGCAGAGAGAAGACAGTTGAGACCTATTC-TTGAGAACAAA 762
Query 886 TCACGTATAATAT-TGGTGCACACAAACTCTGGATATAGACATAGCCTGGGCGAGGTTCT 944
|||||| | || | |||||||||||||||| ||||||| ||||||||| |||||||| |
Sbjct 763 TCACGTTTCAT-TCTGGTGCACACAAACTCAGGATATAAACATAGCCTAAGCGAGGTTTT 821
Query 945 CCATGCTCCC-AACGTGATGAATATGATCAAAGATACTAAAGCAGCAAAAGAGGTTAAAG 1003
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 822 GCATGA-CCCTAACGTGATGAATATGATCAAAGATACTAAAGCAGCAAAAGAGGTCAAAG 880
Query 1004 CTCTCAACGATTT-TCACACCATGCTTTCAAATGATCCAGATCGGGCATGCTATGGACCA 1062
||||||||||||| | ||||||| |||| ||||||||| || | ||||| |||||||||
Sbjct 881 CTCTCAACGATTTCTT-CACCATGTTTTCGAATGATCCAAATAGAGCATGTTATGGACCA 939
Query 1063 AAACACGTGGAAGTTGCTAATGAACGAATGGCAATCCAAACGCTTCTCATTACGGACGAG 1122
||||| |||||||||||| |||||||||||||||||||||| |||||||||| || | |
Sbjct 940 AAACATGTGGAAGTTGCTCATGAACGAATGGCAATCCAAACACTTCTCATTATAGATGGG 999
Query 1123 CT-TTTCAGGAATTCTGACGTAAAAACAAGGAAGAAGTATGTGAATTTGGTGGAGTCGGT 1181
|| ||| ||||| |||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 1000 CTATTT-AGGAACTCTGACGTGAAAACAAGGAAGAAGTATGTGGATTTTGTGGAGTCGGT 1058
Query 1182 GAAAGATTCGGGAGGAGAGGCTTTTATATTTTCGGCGATGCATG-TGTCAGGGGAACAAT 1240
||||||||| |||||||||| ||||||||||||| | ||||||| | ||||||||||||
Sbjct 1059 GAAAGATTCAGGAGGAGAGGTTTTTATATTTTCGTCAATGCATGCT-TCAGGGGAACAAC 1117
Query 1241 TGGCACAGC-TGACTGGAATTGCAGCTCTTCTCAGGTTCCCTTTACCAGAACTCGAAGAC 1299
| ||||||| | ||||||||||||||| |||| ||||||||||||||||| || ||||||
Sbjct 1118 TAGCACAGCAT-ACTGGAATTGCAGCTATTCTTAGGTTCCCTTTACCAGATCTAGAAGAC 1176
Query 1300 ATTGAGATGTAA 1311
||||||||||||
Sbjct 1177 ATTGAGATGTAA 1188
Score = 178 bits (96), Expect = 1e-43
Identities = 127/142 (89%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 175 ATGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGATGGTGGCA 234
||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAAATCATTCGCAAGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGATGATGGCA 60
Query 235 GAGGACTCTGATGATTTGTGGTATGCTTATAACTTGATTGCGGTGGGAG-ATAGTGTAAT 293
|||||||| |||||| | |||||| |||||||| |||||| | |||| ||||||||||
Sbjct 61 GAGGACTCGGATGATCTCTGGTATACTTATAACCTGATTG-GCCCGGAGGATAGTGTAAT 119
Query 294 GGCTGTCACTTTCAGAAAAGTT 315
|||| |||||||||||||||||
Sbjct 120 GGCTATCACTTTCAGAAAAGTT 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5