BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492043
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27510.1 | Symbols: | unknown protein; Has 25 Blast hits to... 3426 0.0
> AT4G27510.1 | Symbols: | unknown protein; Has 25 Blast hits
to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:13746176-13749031 REVERSE
LENGTH=2330
Length=2330
Score = 3426 bits (1855), Expect = 0.0
Identities = 2175/2327 (93%), Gaps = 31/2327 (1%)
Strand=Plus/Plus
Query 1 AAGCAGTTTCTCCTCTTTCCTTACGGCGATGACGGCCAAGCGAAACAGTAAGAAACGCCC 60
||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 8 AAGCATTTTCTCCTCTTTCCTTACGGCGATGACGGCCAAGCGGAAGAGTAAGAAACGCCC 67
Query 61 TGCTTCGAAGGTCTCAGATTCCGTCAACTTATTCCGATCCCTTGCTTCAGCAATTACGTC 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 68 AGCTTCGAAGGTCTCAGATCCCGTCAACTTATTCCGATCCCTTGCTTCAGCAATTACGTC 127
Query 121 CTCTCAGGTTTCTCAGAAGCCAATTTTGAAACGTTTATTGTGCCTTCTGGGTCCTTTATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 CTCTCAGGTTTCTCAGAAGCCAATTTTGAAACGTTTATTGTGCCTTCTGGGTCCTTTATC 187
Query 181 ATTAACCCAACCAATAAATTGGGAGAATTGTGACGTCGCTTCACATTATTGGAATATCAA 240
|||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 188 ATTAACCCAACCAACAAATTGGGAGAATTGTGACATTGCTTCACATCATTGGAATATCAA 247
Query 241 GTTCAGTGGAGAGCAAGTGGAATTGATCAGTTTCGAGGATGTCTGTTACCTCTCTGATGT 300
|||| |||||||| ||||||| ||||||| |||||| |||||||||| ||||||||||||
Sbjct 248 GTTCCGTGGAGAGAAAGTGGACTTGATCAATTTCGATGATGTCTGTTTCCTCTCTGATGT 307
Query 301 TTTGTTCACAGAGCTTGATACGAGTTTCAAAAACCTATTCGCTACTTTGTTCAAACAAAA 360
||||||||||||||||||| |||| || ||| ||| ||||||||||| |||||||||||
Sbjct 308 GTTGTTCACAGAGCTTGATAGGAGTCTCGAAAGCCTGTTCGCTACTTTATTCAAACAAAA 367
Query 361 GGCTGAAGCTTGTCCCACATTTGAAAGCACAGAAGATAGTATTGAATTAGCCACTCTGTT 420
||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 368 GGCTGAAACTTGTCCTACATTTGAAAGTACAGAAGATAGTATTGAATTAGCTTCGCTGTT 427
Query 421 CTTAAAGTCTTGTATGAAGATCATGAGTTTACTTGTGCCCAAACAAGAGCTGGTTCTGGA 480
|||||| | |||||||||||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 428 CTTAAAATGTTGTATGAAGATCATGTCTTTACTTGTGGCCAAACAAGAGCTTGTTCTGGA 487
Query 481 GAAGGCCAAAACTCTTCTCTCGATCCTCACTAGATTGGTTTGTGCAAGAAATGGAGATTG 540
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct 488 GAAGGCCAAAACTCTTCTCTCGATCCTCGGTAGATTGATTCGTGCAAGAAATGGAGATTG 547
Query 541 TTCTTTTGTATTCACGCATGACGGTTCTTTTGATCCCCGCCATATGTTTCTTTGTACAGG 600
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 548 TTCTTTTGTATTCACGCATGACGGTTCTTTAGATCCCCGTCATACGTTTCTTTGTACAGG 607
Query 601 GATTGAGGTTTTCATGGATGAGATTTTGGTGAATAAGTCAATCAGGGATCTTCTTTTCGT 660
|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 608 GATTGAGGTTTTTATGGATGAGATTTTGGTGAATAAGTCAATCAGCGACCTTCTTTTCGT 667
Query 661 AGTTGATTCTGCATTCTCCTCATGTAGACTGTTCAGTAAGCATGATAGGGCCGGTGTGGT 720
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 668 AGTTGATTCTGCATTCTCCTCATGTAGACTGTTTAGTAAGCATGATAGGGCCGGTGTGGT 727
Query 721 GGAAATGGTTTCTGCTCATTTTATCATCTCAACTTCTGATGAGAAAATGAATCAAATGTG 780
| |||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 728 GCAAATCGTTTCTGCTCATTTTATTATCGCAACTTCTGATGAGAAAACGAATCAAATGTG 787
Query 781 TGTTGAGAGATTATATTGGAAGCAAGGTAATGCATTTAGAACTCCCCAGATAAGCATGAG 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 788 TGTTGAGAGATTATATTGGAAGAAAGGTAATGCATTTAGAACTCCCCAGATAAGCTTGAG 847
Query 841 TGCTGCTGTGTCCTTGCTGCTAAACCCGGTTATGTTCTCTGCACCAAGAATGATCCATGC 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 848 TGCTGCTGTGTCCTTGCTGCTAAACCCGGTTATGTTCTCTGCACCAAAAATGATCCATGC 907
Query 901 CTATGTGGTTTTATTGGTGTCTGACGCCATTGGCATTTTTTCACATCCATGCATTAAGGG 960
||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct 908 CTATGTGGTTTTATTGGTGTCTGACGCCATTGGTATTTGTTCACATCCATGTTTTAAGGG 967
Query 961 ATTAGACCTTCAACTTATTGATCACTATATTGATGCATTTGAAAAGTCTGTTGTGTTGTA 1020
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 968 ATTAGACCTTCAGCTTATTGATCACTATATTGATGCATTTGAAAAGTCTGTTGTTTTGTA 1027
Query 1021 TAAGATACACATGTCTAAGAGTGCGAAAGGC-TCATCTGGGAAGTTTGGTTTTTTGACGA 1079
||||| ||||||||||||||||| ||| ||| | |||||||||||||| ||||||||||
Sbjct 1028 TAAGAGACACATGTCTAAGAGTGAGAATGGCCTG-TCTGGGAAGTTTGGCTTTTTGACGA 1086
Query 1080 GTAAGTCTCGGGTGGCTTTTGAACATCGTGTTTTGCCCTCAACACTGACGAAAGTTAATG 1139
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1087 GTAAGTCTCGGGTGGCTTTTGAACATCGTCTTTTGCCCTCAACACTGGCGAAAGTTAATG 1146
Query 1140 ATGTTACACTGAAGCTAAAGGATTCATGGGATTCATATCAAAGTGATAATGCGAAGAGAA 1199
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ATGTTACACAGCAGCTAAAGGATTCATGGGATTCATATCAAAGTGATAATGCGAAGAGAG 1206
Query 1200 AAAACAATGAGCTGGTAGCGTATTCTGTTGCATACGCTAAGGAAAGCTTGTGTATATTTG 1259
||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1207 AAAACAATGAGCTGGTAGCGTATTCTGTTGCATACGCAAAGGAAAGCTTATGTGTATTTG 1266
Query 1260 ATAGCTCCTGCTCGGAAAATATGTTGTCTCAGACCTTAACAATTCTTGGTTGCGTGATAC 1319
||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1267 ATAGCTCCTGCTCTGAAAGTATGTTGTCTCAGACCTTATCAATTCTTGGTTGCGTGATAC 1326
Query 1320 TTAGAGCTAGTTCTGATGATGTTGTGGACTCTGTGTTGGAAAAATACAACACATCTAGTA 1379
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1327 TTAGAGCTAGTTCTGATGATGTTATGGACTCTGTGTTGGAAAAATACAACACATCTAGTA 1386
Query 1380 TGGAAGATCTATATCTACTTGCATCCACACTTAAGTTCATGACTTGTTCGATGTTGCAAG 1439
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TGGAAGATCTATATCTGCTTGCATCCACACTTAAGTTCATGACTTGTTCGATGTTGCAAG 1446
Query 1440 CCATCCGGGTTCTCAGGAATTGGAACTGGCTTCGATCTGAAGCTGTAGGTGATGTTCGAG 1499
|||||||||||||||||||||||||||||| || ||||||| ||||||||||||||
Sbjct 1447 CCATCCGGGTTCTCAGGAATTGGAACTGGC----AT--GAAGCTGGAGGTGATGTTCGAG 1500
Query 1500 CTTGCAAGGAATACAAAGCCATGATGGATGTTGTTCAACGTTTTGAACAGTTCAGTGTTC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1501 CTTGCAAGGAATACAAAGCCATGATGGATGTTGTTCAACGTTTTGAACAGTTCAATATTC 1560
Query 1560 ATTTGCCCTGTCAAAGTTTCCTGCGCGAGAGACTGGAATCTCATCCTCACAGAAATGTGA 1619
|| ||||||||||||||||||||||||| ||| |||||||| | ||||||||| |
Sbjct 1561 ATATGCCCTGTCAAAGTTTCCTGCGCGATAGAATGGAATCTTACCCTCACAGA--T---- 1614
Query 1620 AATCTAAGTGGATGCTTATGCACTTTGCAGGCTTACTGTCTGTAAGCTTTGCACTCAAGC 1679
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1615 ---CTAAGTGGATGCTTATGCATTTTTCAGGCTTACTGTCTGTAAGCTTTGCACTCAAGC 1671
Query 1680 TTGACTTTCTAGTGAAGGACTCTATTTTTGGAATTGTGATATCTCTGTATTTATTCATCC 1739
|||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 1672 TTGACTTTCTAGTGAAGGACTCCATTTTTGGAATGGTGATATCTATGTATTTATTCATCC 1731
Query 1740 TAGAAGGGGGTGACTTGGAAGCACTTGGGGATTCAGTTGGACACTCAGAAAAT-CTTTCA 1798
|||||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||
Sbjct 1732 TAGAAGGGGGTGACTTGGAAGCACTTGGGGATTCAGTTGGTCACTCAGAAAACACGT-CA 1790
Query 1799 TCGTCCATA-TCATCAAGTGGTTCCAAAAACTTGGCAGCTTCTGGTAAAGCTGACGAGAC 1857
||||| ||| | ||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1791 TCGTCTATACT-ATCCAGTGGTTCCAAAAACTTGGCTGCTTCTGGTAAAGCTGACAAGAC 1849
Query 1858 CGCAGTAGATAGGAAACAGAGCGGGGCGGTTGCTTTGAAGTTTCACAAAATCCGAACTTT 1917
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1850 AGCAGTAGATAGGAAACAGAGCGGGGCAGTTGCTTTGAAGTTTCACAAAAACCGAACTTT 1909
Query 1918 GTA-TATGGGGAAGGTGTCTGAAGCTAAAGATCCAGAGAATGATCCAGATTCAGGAGTTG 1976
||| | |||||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 1910 GTACT-TGGGGAAGGTGTCTGAAGCTAAAGGTCCAGAGAATGGTTCAGATTCAGGAGTTG 1968
Query 1977 GTGTTGAAGAGGAAAGCTGCAATGGGGAGAAATTTCTGTGGTGTATGGCTGGAAAAGGTA 2036
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1969 GTGTTGAAGAGGAAACCTGCAATGGGGAGAGATTTCTGTGGTGTATGGCAGGAAAAGGTA 2028
Query 2037 ACCTGAGACAAACCGATGTGGACGAGTTGGCAGATTTCATAGCGTGTGAGCCCGGTAAGG 2096
|| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2029 ACGTGACAAAAACCGATGTGGACGAGTTGGCAGATTTCATAGCGTGTGATCCCGGTAAGG 2088
Query 2097 ACTACTCCGACTGGCTAAAAGGGAGAGAACGATTTCGGAAGCAGCGGTGGAAGTCGGACA 2156
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 2089 ACTACTCCGACTGGCTAAAAGGGAGAGAACGATTTCGGAACCAACGGTGGAAGTCAGACA 2148
Query 2157 AGATTGCTAACCAAAGGTGGAATAAGAAG-AAAAATGCTTGGAGAGAGAGCAGAGGAAGA 2215
|||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 2149 AGATTGCTAAAGAAAGGTGGAATAAGAAGCAAAAA-GCTTGGAGAGAGAACAGAGGAAGA 2207
Query 2216 GTGTCTAAAAGCTGAGTGT-A-TCTTCTGTTGTAAAAGAGTTAATCATGTAGAAATGTCA 2273
| ||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||
Sbjct 2208 GGGTCTAAAAGCTGAATGTTAATCTTCTGTTGTAAAAGAGTTCATCATGTAGAAATGTCA 2267
Query 2274 TTACTTTATTAGCCTCTGATAATTATGTA-AAAATGGTTTCTATTAT 2319
||||||| | | ||||||||||||||| |||||||||||||||||
Sbjct 2268 CTACTTTAGT--C-TCTGATAATTATGTATAAAATGGTTTCTATTAT 2311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5