BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492051
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductas... 2405 0.0
AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductas... 1055 0.0
> AT4G27440.1 | Symbols: PORB | protochlorophyllide oxidoreductase
B | chr4:13725546-13727353 FORWARD LENGTH=1554
Length=1554
Score = 2405 bits (1302), Expect = 0.0
Identities = 1450/1519 (95%), Gaps = 20/1519 (1%)
Strand=Plus/Plus
Query 1 AAAATATCCACTTCGATAGTTTTCTTCAGCAATCGCTTTTGCTACCTCTCTCTCTGTTCG 60
|||||||||||| |||||||||||||||||||| | | | |||||||| ||||||
Sbjct 41 AAAATATCCACTACGATAGTTTTCTTCAGCAAT--C----AC-A-CTCTCTCTTTGTTCG 92
Query 61 AGTACCAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 93 AGTACCAACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTTCGCAA 152
Query 121 AGATGCGAAATTGAATGCTTCTTCATCGTCTTTCAAGGACTCTAGTCTATTTGGTGCCTC 180
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 153 AGATGCGAAGTTGAATGCTTCTTCATCATCTTTCAAGGACTCGAGTCTTTTTGGTGCCTC 212
Query 181 CATTACCGACCAAATCAAATCCGAACATGGATCTTCCTCGTTAAGATTCAAGAGTGAACA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 213 CATTACCGACCAAATCAAATCCGAACATGGATCTTCCTCGTTAAGATTCAAGAGAGAACA 272
Query 241 TAGCTTAAGGAGTCTAGCAATTCGAGCCCAAACCGCTGCGACTTCAAGCCCTACGGTTAC 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 273 GAGCTTAAGGAATCTAGCAATTCGAGCCCAAACCGCTGCGACTTCAAGCCCTACAGTTAC 332
Query 301 AAAATCCGTGGACGGCAAGAAAACGTTGAGGAAAGGAAATGTGGTGGTGACTGGAGCCTC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 333 AAAATCCGTGGACGGCAAGAAAACGTTGAGGAAAGGAAATGTGGTGGTCACTGGAGCCTC 392
Query 361 GTCTGGATTAGGTCTAGCCACGGCTAAAGCTCTAGCCGAGACAGGTAAATGGCACGTGAT 420
|||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 393 GTCTGGGTTAGGTCTAGCCACGGCTAAAGCTCTAGCTGAGACAGGGAAATGGAACGTGAT 452
Query 421 TATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCCGCTAAATCTGCAGGGATGCCTAA 480
||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 453 AATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCTGCTAAATCCGTAGGGATGCCTAA 512
Query 481 AGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGCGTGAGACAGTTCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 513 AGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAGCGTGAGACAGTTTGT 572
Query 541 TGATAACTTCAGGAGAACAGAGATGCCTCTCGATGTTTTGGTCTGCAATGCTGCGGTTTA 600
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 573 TGATAATTTCAGGAGAACAGAGACGCCTCTCGATGTTTTGGTCTGCAATGCTGCGGTTTA 632
Query 601 TTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAGCTTAGCGTTGCGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 633 TTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGAGCTTAGTGTTGCGAC 692
Query 661 GAATCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGA 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GAACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGA 752
Query 721 TTACCCTTCAAAGCGTCTCATCATCGTCGGGTCCATTACCGGGAACACGAATACATTGGC 780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 753 TTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGGGAACACGAATACATTGGC 812
Query 781 GGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTAGCCGGCGGATTAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTTAGCCGGCGGATTAAA 872
Query 841 CGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGTGCAAAGGCTTACAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGGTGCAAAGGCTTACAA 932
Query 901 AGACAGTAAAGTCTGCAACATGTTGACGATGCAAGAGTTTCACAGGCGTTACCATGAAGA 960
|||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 933 AGACAGTAAAGTCTGCAATATGTTGACAATGCAAGAGTTTCACAGGCGTTTCCATGAAGA 992
Query 961 AACTGGAGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTCCACGGGTTTATTCCG 1020
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 993 AACTGGAGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCTCCACAGGTTTATTCCG 1052
Query 1021 AGATCACATTCCGCTCTTCCGTGCCCTCTTCCCTCCCTTTCAGAAGTACATCACTAAAGG 1080
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 AGAGCACATTCCTCTCTTCCGTGCCCTCTTCCCTCCCTTTCAGAAGTACATCACTAAAGG 1112
Query 1081 ATATGTCTCCGAGACAGAGTCAGGCAAAAGACTTGCTCAGGTGGTGAGTGATCCGAGCTT 1140
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1113 ATATGTCTCCGAAACAGAGTCAGGCAAAAGACTTGCTCAGGTGGTGAGTGATCCAAGCTT 1172
Query 1141 GACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCAGCATCTTTTGAGAACCAGTT 1200
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1173 GACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTT 1232
Query 1201 ATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTGGGAGATCAGTGAGAAGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 ATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTGTGGGAGATCAGTGAGAAGCT 1292
Query 1261 CGTGGGCTTGGCCTAATAAACTTGAAATCTGTTAA-TTTGATGAGACCTTTCCGTACCAA 1319
|||||||||||||||||||||||||| |||||||| |||||||| |||| || |||||||
Sbjct 1293 CGTGGGCTTGGCCTAATAAACTTGAAGTCTGTTAAATTTGATGACACCTCTCGGTACCAA 1352
Query 1320 TCGACGAAACCTAGTGAATTTTCGGGATTTTTATAGATGTCTGATTCTGTTGCGAAGttt 1379
|||| |||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1353 TCGAAGAAATCTAGTGAATTTCCGGGATTTTTA--GATATCTGATTCTGTTGCGAAGTTT 1410
Query 1380 tttt-tCCTTA---GTGTCTGTTGAGTGTAGATTGCTTGGCGAGTAGCCCACAATAAAGG 1435
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 TTTTATCCTTATTAGTGTCTGTTGAGTGTAGATTGCTTGGCGAGTAGCCCACAATAAAGA 1470
Query 1436 AATAAAA-TCGGTGAATCTTTAGCTATATTTACTCTGTTTTTCATCGAAACAGAT-CAGT 1493
||||||| | || |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1471 AATAAAAAT-GGCGAATCTTTAGCTTTATTTACTCTGTTTTTCATCGAAACAGATTCAGT 1529
Query 1494 --TATATACTCTGTTTTTT 1510
|||||||||||||||||
Sbjct 1530 AATATATACTCTGTTTTTT 1548
> AT5G54190.1 | Symbols: PORA | protochlorophyllide oxidoreductase
A | chr5:21990999-21992812 REVERSE LENGTH=1441
Length=1441
Score = 1055 bits (571), Expect = 0.0
Identities = 1022/1237 (83%), Gaps = 42/1237 (3%)
Strand=Plus/Plus
Query 67 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGAAAAGATGC 126
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 36 AACAATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGCAAAGATG- 94
Query 127 GAAA-TTGAATGCTTCTTCATCGTC-T--TTCAAGGACTCTAGTCTATTTGGTGCCTC-C 181
|||| || |||||||| |||| || | ||||| || |||||||| || |||| || |
Sbjct 95 GAAAATTAAATGCTTCAGCATCATCATCATTCAAAGAGTCTAGTCTGTTCGGTGTTTCAC 154
Query 182 ATTACCGACCAAATCAAATCCGAACATGGA-TCTTCCTCGTTAAGATTCAAGAGTGAACA 240
|| | || |||| |||| | || | | | |||||||| || |||| |||||| |||||
Sbjct 155 TTT-CGGAGCAAAGCAAAGCTGA-CTTTGTCTCTTCCTCATTGAGATGCAAGAGGGAACA 212
Query 241 TAGCTTAAGGAGTC-TA--GC-A--ATTCGAGCCCAAACCG-CTGCGACTTCAAGC-CC- 291
||||| |||| | || || | |||||||| ||| | | |||||||||| | ||
Sbjct 213 GAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATC-GCGACTTCAA-CTCCA 270
Query 292 TACGGTTACAAAATC--CGTG-GACGGCAAGAAAACG-TTGAGGAAAGGAAATGTGGTGG 347
| | || |||||||| | | ||| |||||||||| || || |||||||| ||||| |
Sbjct 271 T-CAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTT-AGAAAAGGAAACGTGGTTG 328
Query 348 TGACTGGAGCCTCGTCTGGATTAGGTCTAGCCACGGCTAAAG-C-TCTAGCCGAGACAGG 405
| || ||||| || || || ||||| |||| ||||| |||| | | |||||||||||||
Sbjct 329 TCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGC-AAAGGCAT-TAGCCGAGACAGG 386
Query 406 TAAATGGCACGTGATTATGGCGTGCAGAGACTTCCTTAAAGCCGAGAGAGCCGCTAAATC 465
||||||||||||||| |||||||||||||||||||| || || |||||||||||| ||||
Sbjct 387 TAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGCTCAATC 446
Query 466 TGCAGGGATGCCTAAAGACAGCTACACAGTGATGCATTTAGACTTAGCCTCGTTGGACAG 525
||||||||||||||| ||||||||||| ||||||||||| ||||| || || ||||||||
Sbjct 447 TGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCTTTGGACAG 506
Query 526 CGTGAGACAGTTCGTTGATAACTTCAGGAGAACAGAGATGCCTCTCGATGTTTTGGTCTG 585
|||||| ||||| ||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct 507 CGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTGTTGGTCTG 566
Query 586 CAATGCTGCGGTTTATTTCCCGACAGCTAAAGAGCCTACTTACAGTGCTGAAGGGTTTGA 645
|||||| || || ||| || || ||||| | ||||||| || |||||||||||||||
Sbjct 567 CAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAAGGGTTTGA 626
Query 646 GCTTAGCGTTGCGACGAATCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGA 705
||||||||||| || || |||||||| || |||||||| |||| |||||| |||||||
Sbjct 627 GCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGA 686
Query 706 CTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGGTCCATTACCGGGAA 765
||||||||| || ||||| || ||||| ||||||||||| || || ||||| ||||| ||
Sbjct 687 CTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGGAAA 746
Query 766 CACGAATACATTGGCGGGTAATGTACCACCGAAGGCGAATCTCGGTGATTTGAGGGGTTT 825
||| ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |
Sbjct 747 CACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAGGGGACT 806
Query 826 AGCCGGCGGATTAAACGGTTTAAACAGCTCAGCTATGATTGATGGAGGAGATTTCGACGG 885
||| ||||| || ||||| |||||||||| || ||||| |||||||||||||| | ||
Sbjct 807 AGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTTTGTTGG 866
Query 886 TGCAAAGGCTTACAAAGACAGTAAAGTCTGCAACATGTTGACGATGCAAGAGTTTCACAG 945
|||||||| || ||||| || |||||||||||||||||||| ||||| |||||||| ||
Sbjct 867 CGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAGTTTCATAG 926
Query 946 GCGTTACCATGAAGAAACTGG-AGTCACTTTCGCTTCGCTTTACCCCGGTTGCATCGCCT 1004
||||| ||||||||| || || | | ||||| ||||| |||||||||||||| || ||
Sbjct 927 GCGTTTCCATGAAGACACCGGCA-TAACTTTTGCTTCCCTTTACCCCGGTTGTATTGCAA 985
Query 1005 CCACGGGTTTATTCCGAGATCACATTCCGCTCTTCCGTGCCCTCTTCCCTCCCTTTC-AG 1063
| || ||||| ||| |||| || ||||| || |||||| ||||||||||||| |||| ||
Sbjct 986 CGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCC-TTTCCAG 1044
Query 1064 AAGTACATCACTAAAGGATATGTCTCCGAGACAGAGTCAGGCAAAAGACTTGCTCAGGTG 1123
||||||||||| ||||| || ||||||||| ||||| | || ||||||||||||||||||
Sbjct 1045 AAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCTCAGGTG 1104
Query 1124 GTGAG-TGATCCGAGCTTGACGAAATCAGGG-GTTTATTGGAGCTGGAACAATG-CTTCA 1180
||| | |||||| ||||||||||| || ||| || ||||||||||||||||| | | ||
Sbjct 1105 GTG-GCTGATCCAAGCTTGACGAAGTC-GGGAGTGTATTGGAGCTGGAACAA-GACCTCG 1161
Query 1181 GCATCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACGTTGAGAAGGCTCGTAAAGTG 1240
|| || |||||||| ||| | || ||||||| || || || ||||||||||||| |||
Sbjct 1162 GCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTT 1221
Query 1241 TGGGA-GATCAGTGAGAAGCTCGTGGGCTTGGCCTAA 1276
||||| | |||| ||||||||||| ||||||||||||
Sbjct 1222 TGGGAAG-TCAGCGAGAAGCTCGTAGGCTTGGCCTAA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5