BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492054
Length=3449
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27430.1 | Symbols: CIP7 | COP1-interacting protein 7 | chr4... 5380 0.0
> AT4G27430.1 | Symbols: CIP7 | COP1-interacting protein 7 | chr4:13718679-13723047
FORWARD LENGTH=3626
Length=3626
Score = 5380 bits (2913), Expect = 0.0
Identities = 3288/3468 (95%), Gaps = 29/3468 (1%)
Strand=Plus/Plus
Query 1 AAACATTGAATCTTTTTGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 60
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 AAAGATTGAATTTTTTTGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 162
Query 61 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGACCTTGTGATTTTCTCTGGT 120
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 163 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGATCTTGTGATATTCTCTGGT 222
Query 121 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCGTTCGTTACCCATCTCAAGAGC 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 223 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCTTTCGTTACGCATCTCAAGAGC 282
Query 181 GTTAGAGATCAGATTTCTAGAGGTGGATACTCCGTCACTCTCCGTCCTTCCTCCGTCGGT 240
||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||
Sbjct 283 GTTAGTGATCAGATTTCTAAAGGTGGATACTCCGTTACTCTCCGTCCTTCCTCCGTTGGT 342
Query 241 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTCCGATTTGTGACTACTCCGGAG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 343 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTGCGATTTGTGACTACTCCGGAG 402
Query 301 GTTCTTGAGAGGTCTGTAACGTTAGAGAAGGAGATTGAACAGATCGAGGATTCGATTCAA 360
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 403 GTTCTTGAGAGGTCTGTAACATTAGAGAAGGAGATTGAGCAGATCGAGGATTCGATTCAA 462
Query 361 GCTAATGCAGCCGCCATTGCCGGCGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 463 GCTAATGCAGCCGCCATTGCCGGTGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 522
Query 421 TCTCAAAAGTCTACGGTTTTATCAAAGACGAAAGGGGAAACTGATGGAGTCACTGTGGAA 480
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 523 TCTCAAAAGTCTACGGCTTTATCAAAGACGAAAGGGGAAACTGATGGAGACACTGTGGAA 582
Query 481 GAAAATTCTAAGGTTGGTCTTCAGCGTGTTTTGGAGAACCGCAAGGCGGCTTTGTGCAAA 540
|||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 583 GAAAATTCGAAGGTTGGTCTTCAGCGTGTTCTGGAGAACCGTAAAGCGGCTTTGTGCAAA 642
Query 541 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGATTTGAAGTGGACTACATGGAT 600
|||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 643 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGGTTTGAACTTGACTACATGGAT 702
Query 601 GACCT-TTTGTC-TTTCGCTGATGCTTTTGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 658
||||| ||| || ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 703 GACCTCTTT-TCGTTT-GCTGATGCTTTCGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 760
Query 659 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAAGATAGAATGTGGGTGGACCAAATCACGG 718
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 761 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAGGATAGAATGTGGGTGGACCAAATCACTG 820
Query 719 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 880
Query 779 CTGGTGAAGAGAATGATTTGTTGAATGCTACTAACGTAAAGCATGGAAACTCCATGGATG 838
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 881 CTGGTGAAGAGAATGATTTGTTGAATGCTACAAACGTAAAGCATGGAAACTCTATGGATG 940
Query 839 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 1000
Query 899 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTAT---CCTCCTT 955
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1001 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTATCCGCCTCCTT 1060
Query 956 ATATGTTTCCGGGGATGCAAGGCCAGTCACCATATTTCCCTGGTAATATGCAATGGCCCG 1015
|||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |
Sbjct 1061 ATATGTTTCCGGGGATGCAAGGTCAATCACCATATTTCCATGGGAATATGCAATGGCCTG 1120
Query 1016 TAAATATGGGAGATGTGGAGTCAAATGagaagtcttccaagaag--aaa-aagaagaaca 1072
|||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1121 TAAACATGGGAGATGTGGAGTCAAATGAGAAGTCTTCCAAGAAGAAAAAGAAGAAGAAGA 1180
Query 1073 agaacaagaagaagtcgaagcaagaTGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1132
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 AGAATAAGAAGAAGTCGAAGCAAGATGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1240
Query 1133 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1300
Query 1193 ACATAAATTATATAACTTCAAAGAGGAACGGAGCGAAGGAGAGCGATTTGGATGAGTCTG 1252
|||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1301 ACATAAATTATATAACTTCAAAGAGGAATGGAGCGAAGGAGAGTGATTCAGATGAGTCTG 1360
Query 1253 AAGAAGAAGATGGGTTTGTGGATGGAGATTCTATCAAGCAGCAAGTAGAAGAAGCCATTG 1312
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1361 GAGAAGAAGAAGGGTTTGTGGATGGAGATTCTATTAAGCAGCAAGTAGAAGAAGCCATTG 1420
Query 1313 GCTCAGTGGAGAGACGGCATAAATCAACTTCACGCCGTCAGAGGAAACACAAAAGTCACA 1372
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1421 GCTCAGTGGAGAGACGTCATAAATCGACTTCACACCGTCAGAGGAAACACAAAAGTCACA 1480
Query 1373 ACGTTGACGATGATTTAAGTAACAAGGAAACTAAGGCGAATGATAATTGGGATGCCTTCC 1432
||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1481 ACGGTGATGATGATTCAAGTAACAAGGAAACTAAGGGGAATGATAATTGGGATGCCTTCC 1540
Query 1433 AGAATCTTCTTTTGAAAGACAATGACTCAGAGCCAGAAGAATCACTACGAACATCATCAT 1492
||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||
Sbjct 1541 AGAATCTTCTTTTGAAAGACAATGATTCAGAGCCAGAAGAATTACTACGTATATCATCAA 1600
Query 1493 CTGCGTTAAACATGGAGTCTGAAGTTGTGAGAAAGAGAGAACCACCTTCGGATGATTCAT 1552
|||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1601 CTGCGTTAAATATGGCGTCTGAAGTTGTGAGAAAGAGAGAACCGCCTTCTGATGATTCAT 1660
Query 1553 TCTTGGTTGCAAATGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1612
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TCTTGGTTGCAATTGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1720
Query 1613 CAGGTGAGAATGTTCGGATGATAAGGAAAGGGAACAACTATGACGATGAGATGTTGAATC 1672
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1721 CAGGTGAGAATGTTCGGATAATAAGGAAAGGGAACAACTATGACGAGGAGATGTTGAATC 1780
Query 1673 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTTATGATGGGA 1732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1781 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTCATGATGGGA 1840
Query 1733 AGCTCAGAGCCAGAAATGAGGCAGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCTAG 1792
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1841 AGCTCAGAACCAGAAATGAGGCGGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCCAG 1900
Query 1793 AAACAGATCCAGGTCTTGTCAAAACATTTGTAGGAGACCATTTCCAATTAAATAAGAGCA 1852
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1901 AAACAGATCCAAGTCTTGTCAAAACATTTGTAGGAGACCATTTCCACTTAAATAAGAGCA 1960
Query 1853 GTGAGGGAGATGTCCTAACCGATGACTCCTTCATGATCCATTCTCGTGTTGAGGGCCAAG 1912
||||| |||||||||| ||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1961 GTGAGAGAGATGTCCTGACCGATGACTCTTTCATGATCCATTCTCGTGTTGAGAACCAAG 2020
Query 1913 TAGAAGAGTCTCGGTTAAGGACAGAAATCATGGACTCAGACGTTTACGGAACCACCCAAC 1972
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2021 TAGAAGATTCTCGGTTAAGGACAGAAATCATGGACTTAGACGTTTACGGAACCACCCAAC 2080
Query 1973 AAGAAAACAATGCCCAGGAGAACACTTTGCATGAGCCAGATGACCTTTACATGGTTCTTG 2032
||||||||| ||||| |||||||||| |||||| ||||||||||| |||||||||||||
Sbjct 2081 AAGAAAACAGTGCCCCGGAGAACACTCCGCATGAACCAGATGACCTATACATGGTTCTTG 2140
Query 2033 GACGGGAACAAGATGTTAAACCTACATTGTTACCGTGGACCCCTGAAATTGACTTCGAGA 2092
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2141 GACGGGAACAAGATGTTAAACCTACATTGTTACCATGGACCCCTGAAATTGACTTTGAGA 2200
Query 2093 CTAACACTTTGGCTCAAAAAACAAGCAAAATGGATTTGGA-AACTGACACAAAGACCTCT 2151
|||||||||||||||||| |||||||| ||| |||||| | ||||| ||||||| |||||
Sbjct 2201 CTAACACTTTGGCTCAAAGAACAAGCAGAATCGATTTG-ATAACTGCCACAAAGGCCTCT 2259
Query 2152 GCCGGTGAACAAACCTCAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2211
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2260 GCAGGTGAACAAACCTTAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2319
Query 2212 GATGCAAAGTCAAGAGCATCTAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2271
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2320 GATGCAAAGTCAAGAGCATCAAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2379
Query 2272 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGgaagagagaaagaag 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGGAAGAGAGAAAGAAG 2439
Query 2332 agaatggaagaacttttaattcagaggcaaaaaagaattgcggagaagaGTTCTGGTGGT 2391
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2440 AGAATGGAGGAACTTTTAATTCAGAGGCAAAAGAGAATTGCGGAGAAGAGTTCCGGTGGT 2499
Query 2392 AGTGTGTCAAGTTCCTCAGCGTCCAAGAAAACTCCTCCTGCAACCAAAACAGTGAAGAGC 2451
||||| |||||||| | ||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 2500 AGTGTATCAAGTTCTTTAGCGTCCAAGAAAACTCCTACTGTGACCAAGTCAGTGAAGAGC 2559
Query 2452 TC-ATCAAAGA-TCGAGAAGACCCCAGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2509
|| || ||||| | |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2560 TCGAT-AAAGAAT-GAGAAGACTCCTGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2617
Query 2510 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAACAAA 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2618 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAGCAAA 2677
Query 2570 AACCAGTAATCAAAAGAACTTCAAAACCTTCAGGAAACAAGACAGAGAAAGCTCAGGAAA 2629
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2678 AACCAGTAATCAAAAGAACATCAAAACCTTCAGGATACAAGACAGAGAAAGCTCAGGAAA 2737
Query 2630 AGAAATCGAGTAAAATAGGTCAATCTGATGCGAAAAGTCTGGAACTTTCTCGTGACCCGA 2689
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2738 AGAAATCGAGTAAAATAGGTCAATCAGATGCGAAAAGTGTGGAACTTTCTCGTGACCCGA 2797
Query 2690 GTCTCGAAATCAAGGAAACAGTGGTGGAAGATTCACAGTCTTACTTGTCTGAGAAGCAAG 2749
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2798 GTCTCGAAATCAAGGAAACGGTGGTGGAAGATTCACATTCTTACTTGTCAGAGAAGCAAG 2857
Query 2750 TTGATGCACTTCCTGCTGCTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2809
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2858 TTGATGCACTTCCTGCTGTTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2917
Query 2810 GCTTGCCATCAGAAGAAACGGCCAGAGTAAACAACAGACCGAATGAAATCATAGCCGAGA 2869
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2918 GCTTGCCATCAGAAGAAACGGCCAGAGTAAAGAACAGACCGAATGAAATCATAGCAGAGA 2977
Query 2870 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTCAAGAAGACATCTGTTTCTG 2929
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2978 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTGAAGAATACATCTGTTTCTG 3037
Query 2930 AGGATAAGCAAATCACCGCAAACCATTATTCAGAGGATATCGGAGA-GATCAAGGCATCA 2988
| ||||||||||||||| | || ||||| ||||||||| | ||||| | || |||| |||
Sbjct 3038 AAGATAAGCAAATCACCACGAAGCATTACTCAGAGGATGTTGGAGAAG-TCCAGGCTTCA 3096
Query 2989 CAGGAAAAACCAGCGTCTCCAAAGAAGTCAGTGACTTTTTCAGAGACAAACATGGAAGAG 3048
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 3097 CAGGAAAAACCGGTGTCTCCAAAGAAGTCGGTGACTTTTTCAGAGACAAACATGGAGGAG 3156
Query 3049 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCGACGCCACCGGCGACTGAA 3108
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 3157 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCAACGCCACCTGCTACTGAA 3216
Query 3109 ACAGATCATTCCAGGAAGAAATGGAACAATGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3168
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3217 GCAGATCATTCGAGGAAGAAATGGAACAGTGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3276
Query 3169 GTTTTGAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACAGAAC-TTAGAATTCTTC 3227
|| || |||||||||||||||||||||||||||||||||||| || | || |||||||||
Sbjct 3277 GTCTTCAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACCGA-CGTTGGAATTCTTC 3335
Query 3228 TTCTCTGGCATCATCGAACCTTTGTTTCGAGAGGACGTCATGTTGAGTTCAGTTAAAAAG 3287
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 3336 TTCTCCGGCATCATCGAACCTTTGTTTTGAGACGACGTCATGTTGAGTTCAGTTAAAAAG 3395
Query 3288 CCTCTTTTATTCTTTAAATTTTTTCTTGTGTGATATGAAATACTGttttttttgttt-tt 3346
||||| ||||||||||||||||| |||||||||||| ||||||||||||| | ||| ||
Sbjct 3396 CCTCTCTTATTCTTTAAATTTTTCCTTGTGTGATATTAAATACTGTTTTTCAT-TTTATT 3454
Query 3347 -ttGTTATCAGTTTGATTTGTGTCTGTTTATATTACATT-GTTGATGTGTTGTTTATAGC 3404
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 3455 GTTGTTATCAGTTTGATTTGT--CTGTTTATATTACATTTGTTGATGTGTTGTTTATAGC 3512
Query 3405 ATTGATAGTGGACATTTGAGTGT--ATAAAAA-TTGGTTTGATGAGTT 3449
||||| ||||| ||||||||||| ||||||| |||||||| ||||||
Sbjct 3513 ATTGAAAGTGGGCATTTGAGTGTGTATAAAAAATTGGTTTGGTGAGTT 3560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171671278946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5