BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492058
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27410.3 | Symbols: RD26 | NAC (No Apical Meristem) domain t... 1541 0.0
> AT4G27410.3 | Symbols: RD26 | NAC (No Apical Meristem) domain
transcriptional regulator superfamily protein | chr4:13707900-13709013
REVERSE LENGTH=973
Length=973
Score = 1541 bits (834), Expect = 0.0
Identities = 913/952 (96%), Gaps = 2/952 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGTTAGAGAGAAGGATCCGTTAGCCCAATTGAGTTTGCCACCGGGTTTTAGATTT 60
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGGTGTTAGAGAGAAAGATCCGTTAGCCCAGTTGAGTTTGCCACCAGGTTTTAGATTT 60
Query 61 TATCCGACAGATGAAGAACTTCTAGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TATCCGACAGATGAAGAGCTTCTTGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120
Query 121 TTCTCTCTCCAAGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCTCTCCAGGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180
Query 181 AGTAAGCAAACATGTTTTACATTTTTAGGGGACTATTATTGTAAAT-TTTCAGGTAAAGC 239
||||||||||||||||| |||||| ||||||| ||| ||||||| | ||| |||||| ||
Sbjct 181 AGTAAGCAAACATGTTTCACATTTGTAGGGGAGTATAATTGTAACTATTT-AGGTAAGGC 239
Query 240 CTTGTTTGGAGAAAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTGTTTGGAGAGAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299
Query 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCGACGGGTACTGACAAAAT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCAACGGGTACTGACAAAAT 359
Query 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCCGGAAA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCCGGAAA 419
Query 420 AGCTCCCAAAGGCACTAAAACAAACTGGATTATGCATGAGTATCGCTTAATCGAGCATTC 479
||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 420 AGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAACATTC 479
Query 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTATTGTGTCGAATTTACAAGAAAAC 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTGTTGTGTCGAATTTACAAGAAAAC 539
Query 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCGGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCTGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599
Query 600 GAATGGGTCGTCATCGTCTTCTTCGTCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 GAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659
Query 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCTCTCAGGACGCTTCTTAACGG 719
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCAGGACGATTCTTAACGG 719
Query 720 GAATTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATCCCAGAGCTAGCTCCGACCAA 779
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GAACTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATTCCAGAGCTAGCTCCGACCAA 779
Query 780 CGGATTACCGAGTTACGGTAGCTACGATGCGTTTCGAGCGGCGGAAGGGGAGGCGGAGAG 839
|||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct 780 TGGATTACCGAGTTACGGTGGTTACGATGCGTTTCGAGCGGCGGAAGGTGAGGCGGAGAG 839
Query 840 TGGGCACGTGAATCAGCAGCAGAACTCGGGCGGGTTGACTCAGAGTTACGGGTATAGCTC 899
|||||| ||||||| ||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 840 TGGGCATGTGAATCGGCAGCAGAACTCGAGCGGGTTGACTCAGAGTTTCGGGTACAGCTC 899
Query 900 GAGCGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAGTGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5