BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492083
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK dom... 1661 0.0
AT1G04050.1 | Symbols: SUVR1, SDG13 | homolog of SU(var)3-9 1 |... 56.5 6e-07
AT2G42710.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 54.7 2e-06
AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits... 54.7 2e-06
> AT4G27120.1 | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK domain
(InterPro:IPR019153); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:13601970-13604339
REVERSE LENGTH=1249
Length=1249
Score = 1661 bits (899), Expect = 0.0
Identities = 1041/1105 (94%), Gaps = 28/1105 (3%)
Strand=Plus/Plus
Query 83 AGGTAAAAGATGGAGGAGAT-TTTCGCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 141
||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 104 AGGTAAACGATGGAGGAGATATTT-GCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 162
Query 142 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGCAAGTTGCAGA 201
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 163 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGGAAGTTGCTGA 222
Query 202 ACCGCCACAGGTTCAAGCTCGTGAAAATGTGGCACGTGCTACTGGTGGACGTAGGATGCG 261
||| |||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 223 ACCACCACAGGTTCAACCTCGTGAAAACGTGGCACGTGCTGGTGGTGGACGGAGGATGCG 282
Query 262 TCGGAGACCTGCTGCAGCTTCTGGTGCTAGCTCCTCCTCTACATCCAATGTTCAAGTCAG 321
| ||||| | ||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 283 TAGGAGA-C--CTGCAGCTTCTGGTGCTAG---CTCCTCTACATCCAATGTTCAAGAAAA 336
Query 322 TGGGGGT-GAAGATGAAGATGAAGATGAAGATGAAGCTGGTGGGTCTCAAGCCAGAGCAT 380
|| || | || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 337 CGGCAGTGGGAG-TGAAGATGAAGATGAAGATGAAGCTGGTGGAACTCAAGCCAGAGCAT 395
Query 381 CAAAGAAGAAAGAGAAGAAGCGACAAGAGCGGGAAGCACAAAGACAGGCTGAGGAAGCTA 440
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 396 CAAAGAAGAAAGAGAAGAAGCGACAAGAGCGGGAAGCACAAAGACAAGCTGAGGAAGCTA 455
Query 441 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCAGAAATGCGGAGGAAGAAGGATG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCAGAAATGCGGAGGAAGAAGGATG 515
Query 501 AAGAGCGCGAGGCAGAGGAGCTGAAGCTGGAAGAAGAAGAAAAAGCGCGACAAGCCAAGG 560
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 516 AAGAACGCGAGGCAGAAGAGCTGAAGTTGGAAGAAGAAGAAAAAGCGCGACAAGCCAAAG 575
Query 561 AAGAGGAGGCAGCTGCGCTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 620
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AAGAAGAGGCAGCTGCGTTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 635
Query 621 AAGGTACTACAGAGGAAGTGCAAGGTGGAAATCAAGATTTGCTCTCAGAATTTGTTGAAT 680
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 636 AAGGTACTACAGAGGAAGTGCAAGGTGGGAATCAAGATTTGCTTTCAGAATTTGTTGAAT 695
Query 681 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCCGCAGAATTTCATCTACGAA 740
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 696 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCTGCAGAATTTCATCTACGTA 755
Query 741 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 815
Query 801 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 875
Query 861 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 935
Query 921 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACCGAAGAAATTAGCGGCATGGAAGAGA 980
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 936 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACTGAAGAAATTAGCGGCATGGAAGAGA 995
Query 981 TCTCAGTTTCATAGTTGTGTTCCTCGAGTAAAATCGTTTGTCAAAAACAAGAGTTAAA-G 1039
|||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 996 TCTCAGTTTCTTAGTTGTGTTTCTCGGGTAAAATCGTTTGTCAAAAACAAGAGTTAAAAG 1055
Query 1040 CCTTAGG-GAGTCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTT-T----A--- 1090
||||||| | ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1056 CCTTAGGTGC-TCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTTGTTCTTATTT 1114
Query 1091 -----GTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAAATACCATATGTT- 1144
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1115 TACTAGTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAA-TACCATATGTTT 1173
Query 1145 AAATTTGTTGTTTGTCTTACCATTA 1169
||| |||||||||||||||||||||
Sbjct 1174 AAAATTGTTGTTTGTCTTACCATTA 1198
> AT1G04050.1 | Symbols: SUVR1, SDG13 | homolog of SU(var)3-9 1
| chr1:1045598-1049297 REVERSE LENGTH=2675
Length=2675
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 329 GAAGATGAAGATGAAGATGAAGATGAAGCT 358
||||||||||||||||||||||||||||||
Sbjct 496 GAAGATGAAGATGAAGATGAAGATGAAGCT 467
> AT2G42710.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr2:17782308-17785063 FORWARD LENGTH=1525
Length=1525
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 328 TGAAGATGAAGATGAAGATGAAGATGAAG 356
|||||||||||||||||||||||||||||
Sbjct 167 TGAAGATGAAGATGAAGATGAAGATGAAG 139
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Minus
Query 328 TGAAGATGAAGATGAAGATGAAGATGAAG 356
|||||||||||||||||||||||||||||
Sbjct 173 TGAAGATGAAGATGAAGATGAAGATGAAG 145
> AT1G75150.1 | Symbols: | unknown protein; Has 38228 Blast hits
to 24529 proteins in 1168 species: Archae - 169; Bacteria
- 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses
- 317; Other Eukaryotes - 11318 (source: NCBI BLink). | chr1:28204387-28208573
REVERSE LENGTH=2738
Length=2738
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 328 TGAAGATGAAGATGAAGATGAAGATGAAG 356
|||||||||||||||||||||||||||||
Sbjct 1630 TGAAGATGAAGATGAAGATGAAGATGAAG 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5