BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492090
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit ... 2712 0.0
AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan sy... 1417 0.0
> AT4G27070.1 | Symbols: TSB2 | tryptophan synthase beta-subunit
2 | chr4:13586340-13588821 FORWARD LENGTH=1854
Length=1854
Score = 2712 bits (1468), Expect = 0.0
Identities = 1716/1830 (94%), Gaps = 40/1830 (2%)
Strand=Plus/Plus
Query 20 ttttttGTTGTTCGCAAATAAGTTAACGTGGTACTG-ATTTCC----TCCTCTAtttttt 74
|||| |||||||| |||||||||||||||||||| | | | || ||||| | | |
Sbjct 38 TTTTCTGTTGTTCACAAATAAGTTAACGTGGTACCGAACTACCGATTTCCTCCA--CTAT 95
Query 75 tttATTGAATTTCTGGTCaaaaaaaGGTAAGTGTCACATAACGAATCTATAAAACA-AAA 133
|||||||||||||||||| |||||| ||||||| ||||||||||||||||||| | ||
Sbjct 96 TTTATTGAATTTCTGGTC-AAAAAACTTAAGTGTTACATAACGAATCTATAAAA-AGAAC 153
Query 134 CCACACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTTGAGTTTGAGAGATAGAT-AA 192
|| |||||||||||||||||||||||||||||||||||| | |||||| || ||||| ||
Sbjct 154 CCTCACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTCGTGTTTGAAAGCTAGATAAA 213
Query 193 AGATTCACT-AATGGCCACCGCAGGCACCGCTGCTACTTTCAGA--C-CCTCCGTTTCAG 248
||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 214 AGATTCACTAAATGGCCACCGCAAGCACCGCTGCTACTTTCAGACCCTCCTCCGTTTCAG 273
Query 249 CTTCTTCCGAAGCAACCCGTCTGAGATCGCCCTCCAAACTCCCCAAATTTACGCCTCTGC 308
||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 274 CTTCTTCCGAATTAACCCATCTGAGATCACCCTCCAAACTCCCCAAATTTACGCCTCTGC 333
Query 309 CATCGTCTCGCTCACGGTCCTCTTCTTCGTTTTCCGTCTCTTGTACCATCGCTAAGGACC 368
||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 334 CATCGGCTCGCTCACGGTCCTCTTCTTCGTTCTCCGTCTCCTGCACCATCGCTAAGGACC 393
Query 369 CGA-CTGTTTTCATGGCGGA-TAC---G--G----AGGCCGCTGGATCTGATCCGACCAT 417
| | ||||| |||||||||| | | | | |||||||||||||||||||||| ||
Sbjct 394 C-AGCTGTTGTCATGGCGGACT-CGGAGAAGATTAAGGCCGCTGGATCTGATCCGACTAT 451
Query 418 GTGGCAACGGCCTGATTCATTCGGTCGGTTCGGGAAGTTTGGCGGGAAGTATGTCCCCGA 477
||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 452 GTGGCAACGACCTGATTCATTCGGTCGTTTCGGGAAGTTTGGCGGCAAGTACGTCCCCGA 511
Query 478 AACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 AACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGA 571
Query 538 AGATTTCCAGAGAGAATTGGCAGAGATCTTGAAAGACTATGTGGGTCGGGAAAGTCCTCT 597
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 572 AGATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTGGTCGGGAAAGTCCTCT 631
Query 598 TTACTTTGCAGAGAGGCTCACAGAGCATTACCGCCGAGAAAACGGGGAAGGACCCCTCAT 657
||||||||||||||||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 632 TTACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACGGTGAAGGGCCGCTCAT 691
Query 658 ATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 ATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGC 751
Query 718 TCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGGATTATTGCTGAGACAGGGGCTGG 777
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 752 TCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGAATTATTGCTGAGACAGGGGCTGG 811
Query 778 TCAACATGGTGTAGCCACAGCTACCGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTA 837
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 812 TCAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTA 871
Query 838 CATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGG 931
Query 898 TGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGC 991
Query 958 TATAAGGGATTGGGTGACAAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGG 1017
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGG 1051
Query 1018 TCCTCATCCTTACCCTATGATGGTCAGGGACTTTCATGCCGTGATTGGTAAAGAAACAAG 1077
|||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1052 TCCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGTGATTGGTAAAGAAACAAG 1111
Query 1078 GAGACAAGCTATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGG 1137
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GAAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGG 1171
Query 1138 TGGTTCAAATGCCATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGGATGAT 1197
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1172 TGGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGAATGAT 1231
Query 1198 TGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACACGCTGCCACATTGACAAA 1257
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1232 TGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACATGCTGCCACATTGACAAA 1291
Query 1258 AGGAGATGTCGGTGTACTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AGGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCA 1351
Query 1318 AATCATTGAACCACACTCCATCAGTGCCGGATTGGATTACCCTGGAGTCGGACCTGAGCA 1377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1352 AATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACCCTGGAGTCGGACCTGAGCA 1411
Query 1378 TAGTTTCCTTAAAGACATGGGACGGGCTGAGTACTATAGCGTTACCGATGAAGAAGCCTT 1437
|||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||| ||
Sbjct 1412 TAGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCGTTACTGATGAAGAAGCATT 1471
Query 1438 AGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCACTGGAGACATCGCA 1497
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1472 AGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCATTGGAGACATCGCA 1531
Query 1498 CGCGTTGGCCCATCTAGAGAAGCTTTGTCCGACGTTACCTGATGGAACCAGAGTGGTCTT 1557
||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1532 CGCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTGATGGAGCCAGAGTGGTATT 1591
Query 1558 AAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAATATCTCGAAGTTTA 1617
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1592 AAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAGTATCTCGAAGTTTA 1651
Query 1618 AAGAGT--AGATTACTTTCATTTTCACATAGTGATATTTCTTCTACATGTAGTTTGTTAG 1675
|||||| |||||||||||||||||||| |||| |||||||| || |||||||||||||
Sbjct 1652 AAGAGTGTAGATTACTTTCATTTTCACACAGTGCTATTTCTTTTA--TGTAGTTTGTTAG 1709
Query 1676 TTCT--T-GCTTATGGTCGAGAATCCAAAAGTTTGGATCAGAGGGTTAAAAGAAGAGAAT 1732
|||| | ||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1710 TTCTCCTTGCTTATGGTCGGGAATCCAAAAGTTTGGATCAAAGGGTTAA--GAAGAGAAT 1767
Query 1733 AAATGTTATGAATGTATCCTATAAATAATAAGAATGTTCTATGGAACGTATGATGTTCTT 1792
|| ||||||||||||||| ||||||||| || | ||||||||||||||| ||||||||||
Sbjct 1768 AAGTGTTATGAATGTATCATATAAATAA-AA-A-TGTTCTATGGAACGTTTGATGTTCTT 1824
Query 1793 ATAAGCAATTCGAACTGTTTTGTTCTTGAC 1822
||||||||||||||||||||||||||||||
Sbjct 1825 ATAAGCAATTCGAACTGTTTTGTTCTTGAC 1854
> AT5G54810.1 | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan
synthase beta-subunit 1 | chr5:22264594-22266785 REVERSE LENGTH=1671
Length=1671
Score = 1417 bits (767), Expect = 0.0
Identities = 1235/1456 (85%), Gaps = 52/1456 (4%)
Strand=Plus/Plus
Query 195 ATTCACTAATGGCCA-CCGCAGGCACCGCTGCTACTTTCAGACCCTCCG--T-TTCAG-- 248
||||| |||||| || || |||||||| |||||||||||||| |||||| | |||||
Sbjct 40 ATTCAGTAATGG-CAGCCTCAGGCACCTCTGCTACTTTCAGAGCCTCCGTTTCTTCAGCT 98
Query 249 -------CTTCTTCCGAAGCAACCCGTCTGAGATCGCCCTCCAAA-CTCCCCAAATTTAC 300
|||||||| || |||| | ||| ||| |||| |||| || ||||| |||
Sbjct 99 CCTTCCTCTTCTTCCCAATTGACCCATTTGAAATCACCCTTCAAAGCT-GTCAAATATAC 157
Query 301 GCCTCTGCCATCGTCTCGCT-CACGGTCCTCTTCTTCGTTTTCCGTCTCTTGTACCATCG 359
|||||||||||||||||||| || ||| || || | || |||||||| || |||||||
Sbjct 158 GCCTCTGCCATCGTCTCGCTCCA-AGTCATCATC--C-TTCTCCGTCTCCTGCACCATCG 213
Query 360 CTAAGGACCCGACTGTTTTCATGGCGGATACGGAGGCCGCTGGATCTGATCCGACCATGT 419
| ||||||||| ||| ||| | | || |||||| |||||||| ||| || |||
Sbjct 214 CCAAGGACCCGCCTG--TTC-T--C--AT-----GGCCGCCGGATCTGACCCGGCCCTGT 261
Query 420 GGCAACGGCCTGATTCATTCGGTCGGTTCGGGAAGTTTGGCGGGAAGTATGTCCCCGAAA 479
||||||| || ||||| ||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 262 GGCAACGACCCGATTCGTTCGGTCGGTTTGGGAAGTTTGGTGGGAAGTATGTACCTGAAA 321
Query 480 CTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAAG 539
| || |||||||| || ||||| || ||| | ||||||||| | || ||||||||||| |
Sbjct 322 CCCTTATGCACGCTCTATCTGAGCTTGAATCCGCTTTCTATGCTCTTGCCACCGACGATG 381
Query 540 ATTTCCAGAGAGAATTGGC-AGAGATCTTGAAAGACTATGTGGGTCGGGAAAGTCCTCTT 598
||||||||||||| ||||| || |||||||| |||||||||||| | |||||||||||
Sbjct 382 ATTTCCAGAGAGAGTTGGCTGGA-ATCTTGAAGGACTATGTGGGTAGAGAAAGTCCTCTG 440
Query 599 TACTTTGCAGAGAGGCTCACAGAGCATTACCGCCGAGAAAACGGGGAAGGACCCCTCATA 658
|| |||||||||||||| || ||||||||| | || || || || ||||| || || |||
Sbjct 441 TATTTTGCAGAGAGGCTTACGGAGCATTACAGGCGCGAGAATGGCGAAGGGCCTCTTATA 500
Query 659 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 718
||| | || || ||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 501 TACTTGAAGAGAGAAGACTTGAATCACACAGGAGCTCACAAGATTAACAACGCTGTGGCT 560
Query 719 CAGGCTCTTCTCGCCAAGC-GTCTAGGAAAGAA-ACGGATTATTGCTGAGACAGGGGCTG 776
||||||||||| || |||| || | || ||||| | ||||||||||||||||||| || |
Sbjct 561 CAGGCTCTTCTTGCTAAGCGGT-TGGGGAAGAAGA-GGATTATTGCTGAGACAGGAGCGG 618
Query 777 GTCAACATGGTGTAGCCACAGCTACCGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCT 836
||||||||||||| || |||||||| |||||||| ||||| |||||| |||| |||||||
Sbjct 619 GTCAACATGGTGTGGCTACAGCTACTGTGTGTGCCCGTTTTGGTTTGGAGTGTATTATCT 678
Query 837 ACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCG 896
| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 679 ATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTTCAGAATGCGACTTCTTG 738
Query 897 GTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAG 956
|||| ||||| || |||||||||||||||||||| || || ||||| || || |||||||
Sbjct 739 GTGCCGAGGTGAGAGGAGTCCACTCTGGAACAGCGACATTGAAGGATGCGACATCTGAAG 798
Query 957 CTATAAGGGATTGGGTGACAAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGG 1016
| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 799 CGATAAGAGATTGGGTGACAAATGTGGAGACTACCCATTACATATTGGGATCTGTGGCGG 858
Query 1017 GTCCTCATCCTTACCCTATGATGGTCAGGGACTTTCATGCCGTGATTGGTAAAGAAACAA 1076
|||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||
Sbjct 859 GTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGTGATTGGTAAAGAAACAA 918
Query 1077 GGAGACAAGC-TATGGAGAAATGGGGCGGGAAGCCTGATGTTC-TGGTTGCTTGTGTCGG 1134
||| |||||| | |||||||||||||||||||||| |||| || |||| |||||||||||
Sbjct 919 GGAAACAAGCGT-TGGAGAAATGGGGCGGGAAGCCGGATG-TCTTGGTGGCTTGTGTCGG 976
Query 1135 TGGTGGTTCAAATGCCATGGGACTCTTCCATGAATTTGTCG-ATGACACAGAGGTTCGGA 1193
|||||||||||| || ||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct 977 TGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGT-GAATGACACAGAGGTCCGGA 1035
Query 1194 TGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACACGCTGCCACATTGA 1253
|||| ||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||
Sbjct 1036 TGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAACACGCTGCTACATTGA 1095
Query 1254 CAAAAGGAGATGTCGGTGTACTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATG 1313
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 CAAAGGGAGATGTTGGTGTCCTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATG 1155
Query 1314 GCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGATTACCCTGGAGTCGGACCTG 1373
| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1156 GACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACCCTGGAGTCGGACCCG 1215
Query 1374 AGCATAGTTTCCTTAAAGACATGGGACGGGCTGAGTACTATAGCGTTACCGATGAAGAAG 1433
|||| |||||| |||||||||||||||||||||| ||||||||| | ||||| |||||||
Sbjct 1216 AGCACAGTTTCTTTAAAGACATGGGACGGGCTGAATACTATAGCATAACCGACGAAGAAG 1275
Query 1434 CCTTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCACTGGAGACAT 1493
| || ||||| |||||||||||||| ||||| |||||||| || || ||||||||||| |
Sbjct 1276 CGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTCCAGCACTGGAGACCT 1335
Query 1494 CGCACGCGTTGGCCCATCTAGAGAAGCTTTGTCCGACGTTACCTGATGGAACCAGAGTGG 1553
| ||||| | || | || |||||||| ||||| || ||| | || || || |||||||
Sbjct 1336 CACACGCACTAGCTTACCTCGAGAAGCTATGTCCCACATTATCAGACGGGACGAGAGTGG 1395
Query 1554 TCTTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGAC--TG-CAATCAAATATCTCG 1610
|||| |||||||| || ||||| || || ||||||||||| || | | |||||||| |
Sbjct 1396 TCTTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGACAGTGGC--T-AAATATCTTG 1452
Query 1611 AAGTTTAAAGAGTAGA 1626
| |||| ||||| |||
Sbjct 1453 ATGTTTGAAGAG-AGA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90160178820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5