BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492093 Length=1122 Score E Sequences producing significant alignments: (Bits) Value AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | c... 1718 0.0 AT3G30875.1 | Symbols: | pseudogene, putative multidrug resist... 1264 0.0 AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybr... 693 0.0 > AT4G27030.1 | Symbols: FAD4, FADA | fatty acid desaturase A | chr4:13571921-13573070 FORWARD LENGTH=1150 Length=1150 Score = 1718 bits (930), Expect = 0.0 Identities = 1046/1102 (95%), Gaps = 8/1102 (1%) Strand=Plus/Plus Query 1 CTTTCACCTGCAATCTCTCTCAATGGCTGTATCACTTCAAACCAAGTACCCTCTAAGACC 60 ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| Sbjct 9 CTTTCACCTGCAATCACTCTCAATGGCTGTATCACTTCCAACCAAGTACCCTCTACGACC 68 Query 61 TATCACCAACATCCCAAGAAGCTACCGTCCGTCGCTTCTCCGTGTACGTGTCACCTGCTC 120 ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 69 TATCACCAACATCCCAAAAAGCCACCGTCCCTCGCTTCTCCGTGTACGTGTCACCTGCTC 128 Query 121 TGTTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGT 180 ||||||||||| |||||||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 129 TGTTACTACCACCAAGCCTCAGCCTAATCGTGAGAAGCTTCTGGTAGAGCAACGCACTGT 188 Query 181 GAAACCTCCTCTGTCCAACAACCACA-CTCTGCAATCGTCCAAGCCTCGGCCTAACCGTG 239 ||| | ||||||||||||| |||| | ||||||||||| |||||||||| |||||||||| Sbjct 189 GAATCTTCCTCTGTCCAACGACCA-ATCTCTGCAATCGACCAAGCCTCGCCCTAACCGTG 247 Query 240 AGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGA 299 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 248 AGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGACCCAACTTTGA 307 Query 300 AATCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTT 359 ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 308 AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTT 367 Query 360 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCG 419 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 368 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAACCAGCTTTAGCCG 427 Query 420 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATA 479 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 428 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTGGGCCATTGATA 487 Query 480 ACTACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 539 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 488 ACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 547 Query 540 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 548 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 607 Query 600 AAGTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACG 659 ||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 608 AAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGACCCTGTGTTTCACG 667 Query 660 GCTTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCAC 719 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 668 GCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTCCATGCTTGGGCAC 727 Query 720 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTG 779 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 728 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGACATGGGGTTACTTG 787 Query 780 TTTCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCG 839 |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 788 TTTCACGGAGACAGCATGCGGAACATCATCGAGCACCGTATAACAACAATTACTGCATCG 847 Query 840 TGAGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 899 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 848 TGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 907 Query 900 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 908 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCCAAACTCTGACTGGA 967 Query 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAAACAAATTTTTTACAGATTGATACAT 1019 |||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 968 TAGAAGAAACCGAAATCTCCAACAACCAAGCATAAATATTTTTTTTACAGAGTGATACAT 1027 Query 1020 GTACAAGAAAATTTAAGTAATATAATGAAGAGATTTCTTCGTAATTTATACAGTATGTAA 1079 |||||||||||||| ||||||||| |||| |||||||||||||||||||| | |||| Sbjct 1028 GTACAAGAAAATTTCAGTAATATACTGAAAAGATTTCTTCGTAATTTATA---T--GTAA 1082 Query 1080 TAAAGTGTGACTGTATTTAATa 1101 | |||||||||||||||||| Sbjct 1083 CGA-GTGTGACTGTATTTAATA 1103 > AT3G30875.1 | Symbols: | pseudogene, putative multidrug resistance protein, similar to multidrug resistance protein 1 homolog GB:T06165 GI:7442649 from (Hordeum vulgare); blastp match of 54% identity and 0. P-value to GP|2292907|emb|CAA71179.1||Y10099 P-glycoprotein homologue {Hordeum vulgare subsp. vulgare} | chr3:12647725-12654422 REVERSE LENGTH=6698 Length=6698 Score = 1264 bits (684), Expect = 0.0 Identities = 812/875 (93%), Gaps = 4/875 (0%) Strand=Plus/Plus Query 123 TTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGTGA 182 ||||||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 5171 TTACTACTACCAAGCCTCAGCTAAATCGTGAGAAGCTTGTGGTAGAGCAACGCATTGTGA 5230 Query 183 AACCTCCTCTGTCCAACAACCAC-ACTCTGCAATCGTCCAAGCCTCGGCCTAACCGTGAG 241 || |||||||||| ||| | ||| || || |||| | ||||| || |||||| | |||| Sbjct 5231 AATCTCCTCTGTCAAACGA-CACAACCCTACAATTGACCAAGTTTCAGCCTAATCATGAG 5289 Query 242 AAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGAAA 301 |||||||||||||||||||| |||| ||||||||||||| |||| ||||||||| ||||| Sbjct 5290 AAGCTTGTGGTTGAGCAACGTCTTGTGAGTCCTCCTCTGACCAACGACCCAACTCTGAAA 5349 Query 302 TCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTTTA 361 ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | Sbjct 5350 TCGACATGGACCCATCGGTTAAGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTTGA 5409 Query 362 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCGGT 421 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 5410 GCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGATCCAGCTTTAGCCGGT 5469 Query 422 TATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATAAC 481 |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 5470 TATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTTGGCCATTGATAAC 5529 Query 482 TACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 541 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5530 TATGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACCAC 5589 Query 542 AAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTCAA 601 |||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||| Sbjct 5590 AAGTGGTCTTGGACAATCACCATACGGTAATTTGCTAACAATCTACACGCTCTGGCTCAA 5649 Query 602 GTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACGGC 661 |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 5650 GTCATAACCTTTACAATTCTCCCACTAGACCTTGCATTTAACGACGATGTGTTTCATGGC 5709 Query 662 TTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCACAT 721 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 5710 TTTGTGTGCACATTTGCATTTTGCATAATGCTTAGCCAGCAATTCCATGCTTGGGCACAT 5769 Query 722 GGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTT 781 |||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||| Sbjct 5770 GGAACCAAGAGCAAGCGTCCACCTCTCGTGGTAGCGTTGCAGAACATGGGATTGCTTGTT 5829 Query 782 TCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 841 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5830 TCAAGGAGACAGCACGCGGAACATCATCGAGCACCATATAACAACAATTACTGCATCGTG 5889 Query 842 AGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTG 901 |||||| ||||||||||||||||||||||||| || |||||||| | ||||||||||||| Sbjct 5890 AGTGGGACATGGAACAATGTTTTGGATGAGAGCAATGTCTTTGAAGAATTGGAGATGGTG 5949 Query 902 TTTT--ATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959 |||| |||||||||||||| |||||||| | | |||| ||||||||||||||||||||| Sbjct 5950 TTTTTTATTTCCAGCTTGGGATGAGACCTCGATTATGGGGTGAACCAAACTCTGACTGGA 6009 Query 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAA 994 ||||||||| ||||||||||||||| |||||||| Sbjct 6010 TAGAAGAAACAGAGATCTCCAACAACAAAGCATAA 6044 > AT1G62190.1 | Symbols: | Kua-ubiquitin conjugating enzyme hybrid localisation domain | chr1:22980976-22982007 FORWARD LENGTH=1032 Length=1032 Score = 693 bits (375), Expect = 0.0 Identities = 641/769 (83%), Gaps = 20/769 (3%) Strand=Plus/Plus Query 219 CCAAGCCTCGGCCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTC 278 |||| |||| || ||| | |||||| ||||| |||||| ||||||||| || |||||||| Sbjct 104 CCAATCCTCAGCTTAATCATGAGAACCTTGTAGTTGAGAAACGCCTTGTGAATCCTCCTC 163 Query 279 TGT-C-----CAATGACCCAACTTTGAAATCGACATGGACCCATCGGTTATGGGTTGCAG 332 | | | ||| ||||| ||| || ||||||||||||| ||||||||||||||||||| Sbjct 164 TTTCCAAGAACAACGACCCGACTCTGCAATCGACATGGACTCATCGGTTATGGGTTGCAG 223 Query 333 CAGGCTGCACCACTTTGTTTGTCTCTTTAGCTAAATCTGTCATTGGAGGGTTTGATTCTC 392 | || | || || | |||| |||||| ||||||||| ||||||||||||||| ||||| Sbjct 224 CGGGAAGTACAACCATATTTGCCTCTTTCGCTAAATCTATCATTGGAGGGTTTGGTTCTC 283 Query 393 ATCTCTGGCTCGAACCAGCTTTAGCCG-GTTATGCAGGGTACATCTTAGCTGATCTAGGT 451 |||| |||||| |||||||||||| || |||||||||||||| | || ||||||||||| Sbjct 284 ATCTTTGGCTCCAACCAGCTTTAG-CGTGTTATGCAGGGTACGTGTTTGCTGATCTAGGC 342 Query 452 TCTGGTGTCTACCACTGGGCCATTGATAACTACGGTGATG-AGTCAACACC-AGTAGTAG 509 || ||||| ||||||||||||||||||||||| |||| || | |||||||| | |||| | Sbjct 343 TCCGGTGTTTACCACTGGGCCATTGATAACTATGGTGGTGCA-TCAACACCTA-TAGTTG 400 Query 510 GAACCCAAATCGAAGCATTTCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGC 569 || ||||| | ||||| | ||||||||| ||||||| || ||||||||||| | ||| | Sbjct 401 GAGCCCAACTTGAAGCGTCTCAGGGTCATCACAAGTATCCCTGGACAATCACAAAACGTC 460 Query 570 AATTTGCCAACAA-TCTACACGCTCTGGCTCAAGTCATAACCTTTACT-GTTCTCCCACT 627 |||| |||||||| || | || || | |||| || |||||| |||| | ||||| ||||| Sbjct 461 AATTCGCCAACAATTC-ATACACTATCGCTCGAGCCATAACTTTTA-TAGTTCTACCACT 518 Query 628 AGACCTTGCATTTAACGACCCTGTCTTTCACGGCTTTGTGTGCACATTTGCATTTTGCAT 687 | |||||||| ||||| | ||| | ||||| |||||||| ||||||||||||||||||| Sbjct 519 AAACCTTGCAATTAACAATCCTCTGTTTCATAGCTTTGTGAGCACATTTGCATTTTGCAT 578 Query 688 AATGTTTAGCCAGCAATTCCATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCT 747 |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 579 TTTGTTAAGCCAACAATTCCATGCTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCT 638 Query 748 CGTGGTGGCGTTGCAGGACATGGGGTTGCTTGTTTCACGGAGACAGCACGCAGAACATCA 807 |||| ||||||||||||||||||| ||||||| ||||||| | | ||| | | |||||| Sbjct 639 CGTGATGGCGTTGCAGGACATGGGACTGCTTGTCTCACGGAAAGATCACCCGGGACATCA 698 Query 808 TCGAGCACCATATAACAACAATTACTGCATCGTGAGTGGGGCATGGAACAATGTTTTGGA 867 | |||||| ||||||| ||| ||||| | |||||||||||||||||||| |||||||| Sbjct 699 CCAAGCACCGTATAACAGCAACTACTGTGTAGTGAGTGGGGCATGGAACAAAGTTTTGGA 758 Query 868 TGAGAGTAAGGTCTTTGAGGCATTGGAGATGGTGTT-TTATTTCCAGCTTGGG-GTGAGA 925 || ||||| | ||| ||||||||||||||| ||| || ||||||| || || |||||| Sbjct 759 CGAAAGTAACTTATTTAAGGCATTGGAGATGGCGTTGTT-TTTCCAG-TTCGGTGTGAGA 816 Query 926 CCTAGGTCATGGAGTGAACCAAACTCTGACTGGACAGAAGAAACCGAGA 974 || | || |||| || ||||||||||||||||||||||||||||||| Sbjct 817 CCAAACTCGTGGAACGAGCCAAACTCTGACTGGACAGAAGAAACCGAGA 865 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55019797320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5