BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492112
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26890.1 | Symbols: MAPKKK16 | mitogen-activated protein kin... 1832 0.0
> AT4G26890.1 | Symbols: MAPKKK16 | mitogen-activated protein kinase
kinase kinase 16 | chr4:13511839-13513406 FORWARD LENGTH=1568
Length=1568
Score = 1832 bits (992), Expect = 0.0
Identities = 1223/1335 (92%), Gaps = 14/1335 (1%)
Strand=Plus/Plus
Query 210 ATGGAGATTAATTGGAAAAGAGGACAAATCATCGGTCGAGGCTCCACCGCCACTGTCTCA 269
|||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 234 ATGGAGATTAATTGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCT 293
Query 270 ATAGCAATCTCAAGCTCCGGTGAGATCTTCGCCGTTAAATCTGCCGACTTATCTTCTTCA 329
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 294 ATAGCAATCTCAAGCTCCGGTGAGCTCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCG 353
Query 330 TCGTTCTTGCAGAAAGAGCAATCATTCTTGTCTACATTGAGCTCTCCTCACATAGTCAAG 389
|| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 354 TCCTTGTTGCAGAAAGAGCAATCAATCTTGTCTACATTGAGCTCTCCTCACATGGTCAAA 413
Query 390 TACATCGGCTCTGGTTTAACGTACGAGAACAATGGATTGGTGTACAATATACTGATGGAG 449
||||| ||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 414 TACATAGGCACTGGTTTAACGCGCGAGAGCAACGGATTGGTGTACAATATACTGATGGAA 473
Query 450 TACGTTTCCGGCGGGAGTCTTCACGATTTAATCAAAAATTCCGGCGGGAAGTTGCCGGAG 509
|||||||| || || | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 TACGTTTCTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAG 533
Query 510 CCGGAGATAAGATCATACACGCATCAAATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 569
|||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 534 CCGGAGATAAGATCATACACTCGTCAGATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 593
Query 570 GGGATTGTTCACTGCGATTTGAAGAGCCAGAACGTTCTGGTGGAGGAAAACGGCGTTTTG 629
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 594 GGGATTGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG 653
Query 630 AAAATCGCCGACATGGGTTGTGCTAAATCAGTTGGCAAGTCGGAATTATCCGGTACACCG 689
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 654 AAAATCGCCGACATGGGTTGTGCTAAATCGGTTGACAAGTCGGAATTTTCCGGTACACCG 713
Query 690 GCGTTTATGGCCCCGGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCAGCTGATGTGTGG 749
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 714 GCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGATGTGTGG 773
Query 750 GCTTTGGGATGCAC-AGTGATCGAGATGATGACTGGATCAAGTCCTTGGCCCGAGCTAAA 808
||||||||||| || | ||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 774 GCTTTGGGATGTACGA-TGATCGAGATGATGACTGGATCAAGCCCTTGGCCGGAGTTAAA 832
Query 809 CGACGTCGTTGCTGCAATGTATAAGATTGGCTTCTCTGGTGAGTCGCCGGAGATTCCTGG 868
|||||||||||||||||||||||||||||| || || || |||||||||| |||||| |
Sbjct 833 CGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCAGGCGAGTCGCCGGCGATTCCCGC 892
Query 869 GTGGATATCGGAGAAAGCTAAAGACTTTCTGAATAATTGTTTGAAGGAAGATCCAAAACA 928
|||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 893 GTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAAGATCAAAAACA 952
Query 929 GAGATGGACTGTGGAAGAATTGCTTAAACATTCATTTCTCGACGACGAAGAAGAATCTCA 988
||||||||||||||||||||| ||||||||| ||||||| || ||||| |||||||||||
Sbjct 953 GAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGACGAAGAATCTCA 1012
Query 989 GACAAGCGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACAGTGTTGGATCAACGATT 1048
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 GACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGTTGGATCAACGATT 1072
Query 1049 CTGGGATTCATGCGAAACCTCGAAAACTCACTTAATTTCGATGGATCACGAAGACCCTTT 1108
|||||||||||||||| ||| |||| ||||||| ||||||| ||||| |||||||||||
Sbjct 1073 TTGGGATTCATGCGAAAGCTCCAAAAGTCACTTAGTTTCGATTGATCATGAAGACCCTTT 1132
Query 1109 TGCTGATTACTCGGAATCTTGGGGTTCACCGGCTAAACGGATCGAGAAACTCGCCGGAGA 1168
|||||| ||||||||||||| || |||||||||| | |||||||||||||||||||||||
Sbjct 1133 TGCTGAATACTCGGAATCTTTGGATTCACCGGCTGATCGGATCGAGAAACTCGCCGGAGA 1192
Query 1169 TGAATTTTTAAGCTTACCCGATTGGGTTACTGAAGAAGACGGCGGGTGGATTCAAGTGAG 1228
||| |||| |||||||| ||||||| ||| ||||| || ||||| ||||||||||||||
Sbjct 1193 TGAGTTTTCAAGCTTACTTGATTGGGATACGGAAGACGATGGCGGATGGATTCAAGTGAG 1252
Query 1229 AGGCGACGAAT-ATGAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1287
|||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGGCGA-GAAACATAAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1311
Query 1288 AAACAACGTC---GTCG-AT--G---GAAGAAGATGAAGATTGGATTTCGAATCAAGACA 1338
|| ||||||| |||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 1312 AAGCAACGTCATCGTCGCAAACGATTGAAGAAGTTGAAGATTGGATTTCGAATCAAGACA 1371
Query 1339 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1431
Query 1399 TTCAAGGAAATTTAATTGCATTTTATTATTTTAGTGATGAAGGTAAAAATGTATCCATAA 1458
||||||||||||||||||||||| |||||| || |||||||| | |||||||||||||||
Sbjct 1432 TTCAAGGAAATTTAATTGCATTTCATTATTGTACTGATGAAGATGAAAATGTATCCATAA 1491
Query 1459 AGAATTTGTTTCATACTaaaaa-aaaTAATTGTTTTCCAAATTGCAAGCTCATTTTTAAT 1517
||||| |||||| |||||| || ||| | ||||||| |||||||||||||||| || |||
Sbjct 1492 AGAATATGTTTCGTACTAATAACAAACATTTGTTTTTCAAATTGCAAGCTCATGTTAAAT 1551
Query 1518 CCACTAACCAAGTCT 1532
||||||||||||||
Sbjct 1552 TCACTAACCAAGTCT 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75602020770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5