BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492115
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26850.1 | Symbols: VTC2 | mannose-1-phosphate guanylyltrans... 3001 0.0
AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltra... 752 0.0
> AT4G26850.1 | Symbols: VTC2 | mannose-1-phosphate guanylyltransferase
(GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate
guanylyltransferases;GDP-galactose:myoinositol-1-phosphate
guanylyltransferases;glucose-1-phosphate
guanylyltransferase | chr4:13499010-13501648
REVERSE LENGTH=2084
Length=2084
Score = 3001 bits (1625), Expect = 0.0
Identities = 1882/1999 (94%), Gaps = 46/1999 (2%)
Strand=Plus/Plus
Query 24 AAACCCACATCAAAAGATCTCTC-CTT-TTCGTTTCGTGTCTGCTGTTTTGAGTGTC-GG 80
||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||
Sbjct 68 AAACCCACATCAAAAGATCTCTCATTTATTCGTTTCGTTTCTGCTGTTTTGAGTGTCGGG 127
Query 81 ---G--TT--C-G--------TTTTCCGGCGTTCGATTTGAAAAAATCCGGGAAACAGGT 124
| || | | ||||||||||||||||||||||||||||||| |||||||
Sbjct 128 TTCGTTTTAGCTGTAATCTTTTTTTCCGGCGTTCGATTTGAAAAAATCCGGGGAACAGGT 187
Query 125 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCTCATGTCCATATTGT 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 188 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCACATGTCCATATTGT 247
Query 185 TCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 307
Query 245 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGAGGCGGTTCCACCTT 304
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 308 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGTGGCGGTTCCAGCTT 367
Query 305 CAACCTCTTGTCCTTTAGGTTTTAGGAGTTAGGGTTGTTATTAGAGttttttcctt-tt- 362
||| |||| |||||||||||||||||||||||| | || |||| ||||||||||| ||
Sbjct 368 TAACTTCTTTTCCTTTAGGTTTTAGGAGTTAGGG-T-TTGTTAGTGTTTTTTCCTTCTTC 425
Query 363 ttttttttCTGCTGTTGAATCGC-TCTTTCTTGGGGGAAACttttttctttttgctctac 421
||||||| |||| ||||||||| | ||||||||||| || ||||||| ||||||||| |
Sbjct 426 TTTTTTTGGTGCTCTTGAATCGCTTTTTTCTTGGGGG-AAGTTTTTTC-TTTTGCTCTTC 483
Query 422 gaaagtttttgtttttGGAGAATGTTGAAAATCAAGAGAGTTCCGACCGTCGTATCGAAC 481
|||| ||| | ||||| |||||||||||||||||| |||||||||||||| || ||||||
Sbjct 484 GAAA-TTTGTCTTTTTTGAGAATGTTGAAAATCAAAAGAGTTCCGACCGTTGTTTCGAAC 542
Query 482 TACCAGAAGGACGATGGAGCGGATGATTCCGTCGGCTGTGGACGGAATTGCCTTGGCGCT 541
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 543 TACCAGAAGGACGATGGAGCGGAGGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCT 602
Query 542 TGTTGCATTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATATGG-AGAAATCCGG 600
|||||| |||||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 603 TGTTGCCTTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTA-AAAT-C-- 658
Query 601 CGCCGTGGAGAAGCTTGTAATCAGTAATGAAGCTAAAGAGCCTCCTGTGGCTTTTCTCGA 660
|| | |||||||||||||||||| |||| |||| |||||||||||| |||||||||||
Sbjct 659 CG--G-AGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGA 715
Query 661 GTCCCTCGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 775
Query 721 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 835
Query 781 GGGTCGTCACCTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGGTCGTCACTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 895
Query 841 TGATGGCACCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 955
Query 901 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTCTTGACCCTGAGAATTC 960
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTC 1015
Query 961 TCCCAATGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGGCATGTGCTGCTGATTCC 1020
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1016 TCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCC 1075
Query 1021 TCGTGTTCTTGACTGCTTGCCTCAGAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1080
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 TCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1135
Query 1081 CATGGCTGCTGAGGCCT-CTAATCCATACTTCAGACTCGGTTACAACAGCTTAGGTGCTT 1139
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1136 CATGGCTGCTGAGGC-TGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTT 1194
Query 1140 TTGCCACGATCAATCATCTTCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCTCTGG 1199
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1195 TTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCACTGG 1254
Query 1200 AGAAAGCTCCTTCCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1259
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1314
Query 1260 TAAGTTACCCTGTGAGAAGTCTTCTTTTTGAAGGTGGAAGCTCTATGCAAGAGCTATCCG 1319
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1315 TAAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGCTCTATGCAAGAACTATCTG 1374
Query 1320 ATACTGTATCAGAC-GCCTGTGTTTGCCTTCAGAACAACAACATTCCTTTCAACATTCTC 1378
||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1375 ATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAACATTCCTTTCAACATTCTC 1433
Query 1379 ATCTCTGATTGTGGAAGGCAGATCTTCTTGATGCCACAGTGTTACGCAGAGAAACAGGCT 1438
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1434 ATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGTGTTACGCAGAGAAACAGGCT 1493
Query 1439 CTAGGTGAAGTAAGCCCGGAGGTGTTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1498
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1553
Query 1499 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGAGCTTCAGAGGATAACGCG 1558
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1554 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGTGCTTCAGAGGATAACGCG 1613
Query 1559 TGGAGGCTCCTTGCAGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTATTGCTCTC 1618
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1614 TGGAGGCTCCTTGCGGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTACTGCTCTC 1673
Query 1619 GCCTTTGAAGCCATAGGTAGTAGTAACCACGAGGAGGATCTTGAAGGAACCATAGTTCAT 1678
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1674 GCCTTTGAAGCCATAGGTTGTAGTAACCAAGAGGAGGATCTTGAAGGAACCATAGTTCAT 1733
Query 1679 CAGCAAAACCCTAGTGGCAATGTTAACCAGAAAAGCAACCGAACCCATGGAGGTCCGATC 1738
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1734 CAGCAAAACTCTAGTGGCAATGTTAACCAGAAAAGCAACAGAACCCATGGAGGTCCGATC 1793
Query 1739 ACAAACGGGACGGCCGCGGAGTGCCTTGTCCTTCAGTGAACAATATTGTGACTTGGTGGT 1798
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1794 ACAAATGGGACGGCCGCCGAGTGCCTTGTCCTTCAGTGAACAATATGGTGACTTGGTGGT 1853
Query 1799 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTCGAAGCTT 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1854 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTTGAAGCTT 1913
Query 1859 CTTGGTT-ATTGTATGATGGTTGTGGGCATTTTGTGCCTCTAGACTTACTGGTTCTTTGT 1917
||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1914 CTTGGTTTAT-GTATGATGGTTGTGGGCATTTTGTGCCT--AGACTT-CTGGTTCTTTGT 1969
Query 1918 TTTT-GTTATAAGTTGGTGTTTATGAAT-ATATATTTTCTTCACGAGGATGATTATTATT 1975
|||| ||||| ||||||||||||||||| |||||| |||||||| | ||||||||||||
Sbjct 1970 TTTTTGTTATGAGTTGGTGTTTATGAATTATATATGTTCTTCACTAATATGATTATTATT 2029
Query 1976 TGTATAGATTTGATTGTTC 1994
||||||||||||||| |||
Sbjct 2030 TGTATAGATTTGATTATTC 2048
> AT5G55120.1 | Symbols: VTC5 | galactose-1-phosphate guanylyltransferase
(GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases
| chr5:22369095-22371867 FORWARD LENGTH=1874
Length=1874
Score = 752 bits (407), Expect = 0.0
Identities = 788/971 (81%), Gaps = 29/971 (3%)
Strand=Plus/Plus
Query 642 CTCCTGTGGCTTTTCTCGAGTCCCTCGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAG 701
|||| ||| | || ||||| ||| | ||| | ||||||||||| ||| | ||||||||||
Sbjct 596 CTCCGGTGACGTTCCTCGAATCCTTAGTTATTGGAGAGTGGGAAGATCGTTTCCAAAGAG 655
Query 702 GACTTTTTCGCTATGATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTT 761
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 656 GTCTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTT 715
Query 762 TCGTTGCTCAGCTTAACGAGGGTCGTCACCTGAAGAAGAGGCCAACTGAGTTCCGTGTAG 821
|| |||| ||||| || || ||||| || || |||||||| ||||| ||||||||||| |
Sbjct 716 TCATTGCGCAGCTGAATGAAGGTCGGCATCTCAAGAAGAGACCAACCGAGTTCCGTGTTG 775
Query 822 A-TAAGGTGTTGCAGTCTTTTGATGGCACCAAATTCAACTTCACTAAAGTTGGCCAAGAA 880
| ||| | || || | |||||||| | ||||||||| |||||||||||||| ||||||
Sbjct 776 ACAAAGTTCTT-CAACCATTTGATGGAAACAAATTCAATTTCACTAAAGTTGGTCAAGAA 834
Query 881 GAGTTGCTCTTCCAGTTTGAAGCT-G-------G-TGAAGAT-GCCCAAGTTCAGTTCTT 930
|||||||| ||||||||| ||||| | | ||| ||| | || ||||||||||
Sbjct 835 GAGTTGCTTTTCCAGTTTAAAGCTAGCACTAATGATGATGATAG-TGAAATTCAGTTCTT 893
Query 931 CCCTTGCATGCCTCTTGACCCTGAGAATTCTCCCAATGTTGTTGCCATCAATGTTAGTCC 990
| | |||||||| ||| |||| |||||||| | || ||||| |||||||| |||||
Sbjct 894 GGCGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATGTGAGTCC 953
Query 991 GATAGAGTATGGGCATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAGAGGAT 1050
||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||
Sbjct 954 GATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGAT 1013
Query 1051 CGATCACAAAAGCCTTTTGCTTGCAGTTCACATGGCTGCTGAGGCCTCTAATCCATACTT 1110
||||||||||||||||||||||| |||| ||||| ||||| ||| |||||| || ||
Sbjct 1014 TGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTT 1073
Query 1111 CAGACTCGGTTACAACAGCT-TAGGTGCTTTTGCCACGATCAATCATCTTCACTTTCAGG 1169
| |||| || |||||||| | |||| ||||| || || || || ||||||||||||||||
Sbjct 1074 CCGACTTGGATACAACAG-TCTAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGG 1132
Query 1170 CTTATTACTTGGCCATGCCTTTCCCTCTGGAGAAAGCTCCTTCCAAGAAGATAACTACCA 1229
|||| || ||||| |||| ||||| | ||||||||| ||||| |||||| |||||||
Sbjct 1133 CTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAGATCACTACCA 1192
Query 1230 CTGTTAGTGGTGTCAAAATCTC-AGAGCTTC-T-AAGTTACCCTGTGAGAAGTCTTCTTT 1286
| || ||| ||||||||||| | | | || | || ||||||||||||| |||||||
Sbjct 1193 CCAATAATGGCGTCAAAATCTCTA-AAC-TCTTGAA-TTACCCTGTGAGAGGTCTTCTAG 1249
Query 1287 TTGAAGGTGGAAGCTCTATGCAAGAGCTATCCGATACTGTATCAGACGCCTGTGTTTGCC 1346
|||||||||||| | | || |||| || | ||||||||||||||||| | ||||| |
Sbjct 1250 TTGAAGGTGGAAACACCATTAAAGATCTCGCAGATACTGTATCAGACGCATCCGTTTGTC 1309
Query 1347 TTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGATTGTGG-AAGGCAGA-TCTT 1404
|||||||||||||||||||||||||||||||||||||||| | ||| || | || ||||
Sbjct 1310 TTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAA-C-GAATCTT 1367
Query 1405 C-TTGATGCCACAGTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTAAGCCCGGAGG-TG 1462
| || | || |||||||||||||||||||||||| |||| ||||| ||| | | | |
Sbjct 1368 CCTTC-TCCCTCAGTGTTACGCAGAGAAACAGGCTTTAGGAGAAGTTAGCTCA-ACGCTA 1425
Query 1463 TTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGG 1522
||||| || |||||||| ||||| || |||||||| ||||| |||||||| ||||||||
Sbjct 1426 TTGGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGG 1485
Query 1523 AAAGAGGATTACGAAGGAGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCAGAAGCTTCT 1582
||||| || || |||||||| ||||| || || || |||||| | || || |||| ||||
Sbjct 1486 AAAGAAGACTATGAAGGAGCGTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCT 1545
Query 1583 CTGTCGGAGGA 1593
| || |||||
Sbjct 1546 TTATCAGAGGA 1556
Score = 172 bits (93), Expect = 9e-42
Identities = 159/187 (85%), Gaps = 19/187 (10%)
Strand=Plus/Plus
Query 122 GGTGATCGG-AATCACGGCTATACACGGGAT--A-TCACGGGGTGTT-AGCTCTCATGTC 176
||| ||||| |||||||||||| ||||||| | ||||| | || |||| |||||||
Sbjct 150 GGTAATCGGTAATCACGGCTATTTACGGGATAAAGCCACGGCCT-TTGAGCTTTCATGTC 208
Query 177 CATATTGTTCGACAGAAGGGTTGTTTAATCGA-AACTAATCCTTTGCCGCACGGAGGACG 235
|| | || | ||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 209 CA-A-----CG--A-AAGGGTTGTTTAATC-ATAACTAATCCTTTGCCTCACGGAGGACG 258
Query 236 TGGAGCTCTGCCGTCTGAAGGCGGCAG-CCCTTCCGATCTCCTCTTTCTCGCCGGAGGCG 294
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 259 TGGAGCTCTGCCGTCTGAAGGCGGCAGTCCCT-CCGATCTCCTCTTCCTCGCCGGAGGCG 317
Query 295 GTTCCAC 301
|||||||
Sbjct 318 GTTCCAC 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98794672560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5