BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492127 Length=1515 Score E Sequences producing significant alignments: (Bits) Value AT4G26750.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2224 0.0 > AT4G26750.1 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475694-13478523 REVERSE LENGTH=1561 Length=1561 Score = 2224 bits (1204), Expect = 0.0 Identities = 1382/1464 (94%), Gaps = 28/1464 (2%) Strand=Plus/Plus Query 1 GGGATTTTAGAGGCCCTCTCTGCGACGTCGTTTATAGTTTGCAATCAGAAGCGCGTCAAA 60 ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1 GGGATTTTAGAGGTCCTTTCTGCGACGTCGTTTCTAGTTTGCAATCAGAAGCGCGTTAAA 60 Query 61 TAAAGGAAAATTTCTTGAGC--TCTTGTC-T-----GTC--T--TA-ACAAA--T-C--A 102 || ||||||||||||||||| | ||||| | || | | | ||| | | | Sbjct 61 TACAGGAAAATTTCTTGAGCTGTTTTGTCTTAACAAATCAATCGGAGAAAAAGCTACGGA 120 Query 103 -ATCG-GAGAAGAGAGAATCTATGTCGAACGCAAACGAACCAGCCAGGGCTCTTCTACCT 160 ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 121 GCTCGAGAGAAGAGAGAATCTATGTCGAACCCAAACGAACCAGCCAGGGCTCTTCTGCCT 180 Query 161 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 240 Query 221 CTATATGCCATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 280 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTATATGCAATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 300 Query 281 TCAATTCTCATGTCTCTCATTAATCAACTTGAAAAGGATAAGAAATCATTGAATCTGTCC 340 || |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| Sbjct 301 TCGATTCTCATGTCTCTCATTAATCAACTCGAAAAGGATAAAAAATCATTGACTCTGTCC 360 Query 341 CCAGATGACAATATGCATGTGGAGGGGTTTGCA-TTAAGTGTCTTTGCAAAGGCAGACAA 399 ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| Sbjct 361 CCAGATGACAATATGCATGTGGAGGGGTTTGCACTT-AGTGTCTTTGCTAAGGCAGACAA 419 Query 400 GCAGGATCGTGCAGGAAGAGCTGACTTGGGCACTGCCAAAACTTTTTATGCTGCGA-CAA 458 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 420 GCAGGATCGTGCAGGAAGAGCAGACTTGGGCACTGCCAAAACTTTTTATGCTGCGAGC-A 478 Query 459 TCTTCTTTGAAATTCTGAGCCAGTTTGG-CCCTGTACCTCCTGATATAGAGCAGAAACAG 517 |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 479 TCTTCTTTGAAATTCTGAGCCAGTTTGGTCCC-GTACCTCCTGATATAGAGCAGAAACAC 537 Query 518 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 597 Query 578 ACTCCAGGTGATCCTGTTGATGATGAAAATGATTTATCCATCCCATCAAGCGGTCCTAGT 637 ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 598 ACTCCAGGTGATCCTGTGGATGATGATACTGATTTATCCATCCCATCAAGCGGTCCTAGT 657 Query 638 GGCTCCTATGATCACGGTGCAAGTGATTCCAACACAACAAATCATCATAGAACAGAGCCT 697 ||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| | Sbjct 658 GGCTCCTATGATCACAGTGCAAGTGATACCAACACAACAAGTCATCATAGAACAGAGCTT 717 Query 698 GATCCATCCCATGACTCGAATGATGACTCCAGCCAACATCACTTCCCTGAAGTGCCACAA 757 |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 718 GATCCACCCCATGACTCGAATGATGACTCCAGCCACCATCAATTCCCTGAAGTGCCACAA 777 Query 758 CACCCTCTACCTCCCAGGTTTCATGACAATCCTACCAACGATTATCCCACAGATGTCCCG 817 ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| Sbjct 778 CACCCTCTACCTCCCAGGTTTTATGACAATCCGACCAACGATTATCCCGCAGATGTCCCA 837 Query 818 CCTCCACCACCGTCTTCTTACCCTTCCAACGATC-TCCATCCCCCTCCCACGGGACCATC 876 |||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||| Sbjct 838 CCTCCACCACCGTCTTCTTACCCTTCCAACGATCAT-CTTCCCCCTCCCACAGGACCATC 896 Query 877 AGACTCCCCTTACCAGCATCCTTACAGTCATCAACCATACCACCAAGACCCGTCACAACA 936 |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| Sbjct 897 AGACTCCCCTTACCCGCATCCTTACAGTCATCAACCATACCACCAAGACCCGCCAAAACA 956 Query 937 CATGCCGCCACCACAAAACTACTCAGCCCATGAGCCTTCTCCAAATTCTCTCCCCAATTT 996 |||||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||| Sbjct 957 CATGCCGCCACCGCAAAACTACTCATCTCATGAGCCTTCTCCAAATTCTCTCCCTAATTT 1016 Query 997 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTCCTCCCCACTACCCTTC 1056 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1017 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTTCTCCCCACTACCCTTC 1076 Query 1057 TCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCATTCCGCACCTGCTCCTTCTTC 1116 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1077 TCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCACTCTGCACCTGCTCCTTCTTC 1136 Query 1117 CACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATAT 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 CACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATAT 1196 Query 1177 TGCTCCTGTGCTAGATCCTGCACCGAGTCCAGCTCAGAAGTACCATTACGACAGCAGCTA 1236 |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||| Sbjct 1197 TGCTCCCGTGCTAGATCCTGCACCGAGTTCAGCTCAGAAGTACCATTACGATAGCAGCTA 1256 Query 1237 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACACAAGGCTGCTAGATTCGCTGTGGGAGC 1296 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1257 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACTCAAGGCTGCTAGATTCGCTGTGGGAGC 1316 Query 1297 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTGAAGAAGTCACTTGAGTTGCT 1356 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1317 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTCAAGAAGTCACTTGAGTTGCT 1376 Query 1357 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATTTAATCTATGAAACTTGGGG 1416 |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 1377 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATCTAATCTATGACACTTGGGG 1436 Query 1417 TTGATGTTAgtgtgtgtgtgtgtT 1440 |||||||||||| ||||||||||| Sbjct 1437 TTGATGTTAGTGCGTGTGTGTGTT 1460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74748611505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5