BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492154
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26550.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1330 0.0
AT5G56020.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 671 0.0
> AT4G26550.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr4:13402515-13404345 REVERSE LENGTH=1055
Length=1055
Score = 1330 bits (720), Expect = 0.0
Identities = 909/995 (91%), Gaps = 34/995 (3%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCCCGAGTAAATAtttttttAGCTGCGGCGTTT--------A-C---AAAC 48
||||||||||||||||||| || || |||||||||||||||| | | ||||
Sbjct 1 TCTTCTTCTTCCCGAGTAAGTAATTCTTTAGCTGCGGCGTTTACCAAAAAACCTTAAAAC 60
Query 49 GTCCACGAAAAATCTCCGATCGCCGGCTTTCTGGTCTTTCACTGCTTGCTTCCCCTGAAG 108
||| ||||||||| ||||||||||||| ||||||||| ||| || |||||| || |||||
Sbjct 61 GTCAACGAAAAATATCCGATCGCCGGCGTTCTGGTCTATCATTGTTTGCTTTCCTTGAAG 120
Query 109 ATTTCGAAACCAAGTTaaaaaaaaaaTATGTCACAAGGATGGTTTTCGATGGGCGGGAGT 168
|| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATCCCGAAACC---------CAAAAA-ATGTCACAAGGATGGTTTTCGATGGGCGGGAGT 170
Query 169 AGCAGCGGAGATCAGCAGCAGCAGCAATCGGGTTCATCTCTGCTCGCGGATTGGAATTCT 228
|||| || |||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 171 AGCACCGTAGAT---CAGCAGCAGCAATCGGGTTCGTCTCTGCTTGCGGATTGGAATTCT 227
Query 229 TACGCAGCCTCTAGAGATTTCGAGGAAAGTAGCGGAAGCTTCGGTTTTGATATCGAATCC 288
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 228 TACGCAGCCTCTAGAGATTTCGAGGAAAGCGGCGGAAGCTTCGGCTTTGATATCGAATCC 287
Query 289 GCCGTTAGATCTGCCAATGACACTGTTTCTGGCACCTTCAGTGTGGTTTCAAAGGGAGTT 348
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 288 GCCGTTAGATCTGCCAATGACACTGTTTCGGGCACCTTCAGTGTGGTTTCAAAAGGAGTT 347
Query 349 AGAGATATCCCGGGGAGCCTGCAGTCAGCAACCAGCAGTATGCCTTCAGGAAAAGCGCTC 408
|||||||| || |||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 348 AGAGATATTCCAGGGAGCTTGCAGTCAGCAACAAGTAGTATGCCTTCAGGAAAAGCGCTC 407
Query 409 ATGTATTTCGGTTTACTTCTCGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACAATG 468
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 408 ATGTATTTCGGTTTACTTCTCGCAAGTGGTGTTTTCTTCATCTTCATTGCCTTCACAATG 467
Query 469 TTTCTTCCAGTCATGGTGCTTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TTTCTTCCAGTCATGGTGCTTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGT 527
Query 529 GGATTTATCATTGGATCCTTCTTCGCACTTCGTGGCCCAAAAAACCAGCTCGCACACATG 588
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 528 GGATTCATCATTGGATCCTTCTTCGCACTTCGTGGCCCTAAAAATCAGCTCGCACACATG 587
Query 589 TCATCGATGGAGAGGCTTCCTTCAACCCTAGGTTTCATTGCCACCATGGTTGGTACCATA 648
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 588 TCTTCGATGGAGAGGCTTCCTTCAACCCTAGGTTTCATTGCTACCATGGTTGGTACCATA 647
Query 649 TATGTATCGATGGTTCTCCACAGCTACATTCTCTCGGTGCTCTTCTCTGTGTTACAGGTT 708
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 TACGTATCAATGGTTCTCCACAGCTACATTCTCTCGGTGCTCTTCTCAGTGTTACAGGTT 707
Query 709 CTTGCACTGGTTTATTACTGTATATCCTACTTCCCTGGTGGATCATCCGGCATGAGGTTC 768
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 CTTGCGCTGGTTTACTACTGTATATCCTACTTCCCTGGTGGATCATCAGGCATGAGGTTC 767
Query 769 CTCAGTTCTGCTCTCACCTCATCGGCGTTAAGAGTTTTCGGGAGATGAGCTTTCACAGCC 828
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||
Sbjct 768 CTCAGTTCTGCTCTCACCTCATCTGCGCTAAGAGTTTTCGGGAGATAAGCTTTCGTAGCC 827
Query 829 AATCTGGGAGAGGGAACAATACTTTACTTGTTGGTGTACAAAGAAAGATGTCAGA-GCGT 887
|||||||||||| ||||||||||| || |||||||||||||||||||| || ||||
Sbjct 828 AATCTGGGAGAGAGAACAATACTT-----GTCGGTGTACAAAGAAAGATGTC-GAAGCGT 881
Query 888 TTTT-GGTATACTCTTTAACATAGATTTGAATGAAAACCCCCGAAAAGACAAATGATCGT 946
|||| ||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 882 TTTTTGGTATACTCTTTAACATAGATTTGA-TGAAATCCCTCGAAAAGATAAATGATCGT 940
Query 947 GAAGGAAATGTTTAATGAAGAACCCAAGTGATGTT 981
|||||||||||||| |||||||||||| |||||||
Sbjct 941 GAAGGAAATGTTTAGTGAAGAACCCAATTGATGTT 975
> AT5G56020.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr5:22684405-22686369 FORWARD LENGTH=1037
Length=1037
Score = 671 bits (363), Expect = 0.0
Identities = 592/698 (85%), Gaps = 33/698 (5%)
Strand=Plus/Plus
Query 143 AAGGATGGTTTTCGATGGGCGG---GAGTAGCAGCGGAGATCAGCAGCAGC-A-----GC 193
||||||||||| ||||| |||| ||||||||||||||||||||||||| | ||
Sbjct 198 AAGGATGGTTTCCGATGAGCGGCACTAGTAGCAGCGGAGATCAGCAGCAGCAACCGCTGC 257
Query 194 AATC--G-GGTTCATCTCTGCTCGCGGATTGGAATTCTTACGCAGCCTCTAGAGATTTCG 250
|| | | || | |||||||| || |||||||||||||||||||| || |||||||| |
Sbjct 258 AAACAGGAGGAACGTCTCTGCTAGCTGATTGGAATTCTTACGCAGCATCGAGAGATTTTG 317
Query 251 AGGAAAG-TAGCGGAAGC-TTCGGTTTTGATATCGAATCCGCCGTTAGATCTGCCAATGA 308
| | ||| | ||||| | || || || ||||||||||||||||||||||||||||| ||
Sbjct 318 AAG-AAGACACCGGAA-CTTTAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGA 375
Query 309 CACTGTTTCTGGCACCTTCAGTGTGGTTTC-AAAGGGAGTTAGAGATATCCCGGGGAGCC 367
||||||||| |||||||| | ||| ||||| ||| ||||||||||||| | ||
Sbjct 376 CACTGTTTCCGGCACCTTTAATGTTGTTTCGAAA-GGAGTTAGAGATA--------A-CC 425
Query 368 TGCAGTCAGCAACCAGCAGTATGCCTTCAGGAAAAGCGCTCATGTATTTCGGTTTACTTC 427
||||||| ||||| || |||||||||||||||||||| | |||||||||||||||||||
Sbjct 426 TGCAGTCTGCAACAAGTAGTATGCCTTCAGGAAAAGCTTTGATGTATTTCGGTTTACTTC 485
Query 428 TCGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACAATGTTTCTTCCAGTCATGGTGC 487
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 TAGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACCATGTTTCTTCCAGTCATGGTGC 545
Query 488 TTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGTGGATTTATCATTGGATCCT 547
||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 546 TTATGCCACAGAAGTTTGCAATTTGTTTTACCCTTGGATGTGGATTTATCATCGGATCTT 605
Query 548 TCTTCGCACTTCGTGGCCCAAAAAACCAGCTCGCACACATGTCATCGATGGAGAGGCTTC 607
||||||| ||||||||||| |||| || ||||| |||||||||||| ||||||||||
Sbjct 606 TCTTCGCTCTTCGTGGCCCGCAAAATCAACTCGCTCACATGTCATCGGCAGAGAGGCTTC 665
Query 608 CT-TCAACCCTAGGTTTCATTGCCACCATGGTTGGTACCATATATGTATCGATGGTTCTC 666
| | ||| ||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 666 CACT-AACTTTAGGTTTCATTGCCACCATGGTTGGCACCATATATGTCTCGATGGTGCTC 724
Query 667 CACAGCTACATTCTCTCGGTGCTCTTCTCTGTGTTACAGGTTCTTGCACTGGTTTATTAC 726
|| |||||||||||||| ||| | ||||||| ||||||||| ||||||||| || |||
Sbjct 725 CATAGCTACATTCTCTCTGTGATTTTCTCTGCATTACAGGTTATTGCACTGGCGTACTAC 784
Query 727 TGTATATCCTACTTCCCTGGTGGATCATCCGGCATGAGGTTCCTCAGTTCTGCTCTCACC 786
|||||||| || ||||||||||||||||| || |||| ||||||||||||| |||| |||
Sbjct 785 TGTATATCATATTTCCCTGGTGGATCATCGGGAATGAAGTTCCTCAGTTCTACTCTTACC 844
Query 787 TCATCGG-CGTTAAGAGT-TTTCGGGAGATGAGCTTTC 822
|| || | | || || | ||| |||||||||||||||
Sbjct 845 TCCTCTGTC-TTCCGAATGTTT-GGGAGATGAGCTTTC 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5