BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492197
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26150.1 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive... 1687 0.0
> AT4G26150.1 | Symbols: CGA1, GATA22, GNL | cytokinin-responsive
gata factor 1 | chr4:13253210-13254904 FORWARD LENGTH=1304
Length=1304
Score = 1687 bits (913), Expect = 0.0
Identities = 1201/1331 (90%), Gaps = 56/1331 (4%)
Strand=Plus/Plus
Query 1 ATGGGTTCGAATTTTCATTACACTATAGATCTCAATGAAGATCAAAACCATCAACCTTTT 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTTCCAATTTTCATTACACAATAGATCTCAATGAAGATCAAAACCATCAGCCTTTT 60
Query 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCA--T-------------CATCAACAACAA 105
|||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCATCTACAACAACAACAACAACAACAACAA 120
Query 106 CATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTCGATGTCACCGTCTCTTTCCTAC 165
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTTGATGTCACCGTCTCTTTCCTAC 180
Query 166 TTTCCTTTCTTGATCAACTCTCCCCAAGATC----A-A-GTTGGGTACAACAATAACACT 219
|||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||
Sbjct 181 TTTCCTTTCTTGATAAACTCTCGCCAAGATCAAGTATATGTTGGGTACAACAATAACACT 240
Query 220 TTTCATGATGTTCTTGATACCCATCTCTCTCAACCTCTCGAGACCAAG---TTTGTATCT 276
|||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||
Sbjct 241 TTTCATGATGTTCTTGATACCCATATCTCCCAACCTCTCGAGACCAAGAACTTTGTATCT 300
Query 277 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCAAAGAAGGAGACACGACTAAAATTG 336
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCCAAGAAGGAGACACGACTAAAATTG 360
Query 337 ACGATAAAGAAGAAATATAATCATCAAGACCAAACCAATCTTCCTCAATCCCCGACAAAA 396
||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 361 ACGATAAAGAAGAAAGATAATCATCAAGACCAAACCGATCTTCCTCAATCCCCAATAAAA 420
Query 397 GATAAGGCAGGAACTAATTCGCTCAAGTGGATATCTTCGAAGGTGAGATTGATGAAGAAG 456
|| | | |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GACATGACAGGAACTAACTCGCTCAAGTGGATATCTTCGAAGGTGAGATTAATGAAGAAG 480
Query 457 AAAAAGGCCATTATTACCACCACCGACAGCAACAAACAACACGCTAATAACGACCAATCC 516
|||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct 481 AAAAAGGCGATTATTACCACCAGCGACAGCAGCAAACAACACACTAATAACGACCAATCC 540
Query 517 TCAAACCTAAGCAA-TCTGGAAAGACAGAATGGTTATAACAACAATTGCGTGATTAGGAT 575
|||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 TCAAACCTAAGCAATTC-GGAAAGACAGAATGGTTATAACAACGATTGCGTGATTAGGAT 599
Query 576 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 659
Query 636 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGAAAGGCGAGGCGGGCCGCTATGGCCAC 695
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 660 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGGAAGGCCAGGCGGGCCGCTATGGCCAC 719
Query 696 GGCAACTGCAACCGCAATCTCTGACGTATCACCACCTCTCATGAAGAAGAAGATGCAAAA 755
|||||| ||||||||| |||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 720 GGCAACCGCAACCGCAGTCTCTGGCGTATCCCCACCGGTCATGAAGAAGAAGATGCAAAA 779
Query 756 CAAGAACAAGATATCAAATGGAGTTTATAAACCCTCCTCTCCTTCGGCTCTAAAGGTAAA 815
||||||||||||||||||||||||||||||| || ||||||| | | |||||||||||
Sbjct 780 CAAGAACAAGATATCAAATGGAGTTTATAAAATCTTATCTCCTTTGCCCCTAAAGGTAAA 839
Query 816 CATGTGTAAGAGAATGATCACACTAGAGGAGACCGCAGCAGCCGAGGATTTGGAGACTCA 875
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 840 CACGTGTAAGAGAATGATCACACTAGAGGAGACCGCATTAGCCGAGGATTTGGAGACCCA 899
Query 876 GAGCAACTCCACGATGTTATCACCTTCTTCATCTTCAGACAAGAAT-TATTTCGATGATC 934
|||||||||||||||||||||| | ||||| ||||| | | |||||||||||||
Sbjct 900 GAGCAACTCCACGATGTTATCA--T-CTTCA------GACAATA-TCTATTTCGATGATC 949
Query 935 TAGCAATAATCTTGAGCAAAAGTTTAGCTTATCAGCAAGTTTTCCCTCAGGATGAGAAGG 994
||||| || | ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 950 TAGCATTACTGTTGAGCAAAAGTTCAGCTTATCAGCAAGTTTTCCCTCAAGATGAGAAGG 1009
Query 995 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAT 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAG 1069
Query 1055 TATTTTTATTATAACTTACCTGCTTAAGAAATTAGGGAGTTAATATAAACCATACCATAA 1114
|||||| ||||||||| | |||||||||||| | | |||||||||||||||||||
Sbjct 1070 TATTTTAATTATAACTCGCATGCTTAAGAAAT-A---A---AATATAAACCATACCATAA 1122
Query 1115 TCCCTGATACCAAATAATATCTAGAATATTAATTAGTTTGGTGAAAATTTTGTTTCTTGC 1174
|||| ||| | | ||||||||||| |||| | | | ||||| ||||||| | |
Sbjct 1123 GCCCTCATAGCTAGTAATATCTAGATTATT--TGA-TACA-TGAAA-TTTTGTTGC--G- 1174
Query 1175 CGTGATATAT-A-TATCAGTCAGTCCAACTTTATAATAAGAGAATGTTGGGGTTTACTAG 1232
||||||||| | | ||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 1175 -GTGATATATTAATTTCAGTCAGTCCAACTTTATTATAAGAGAGTGTTGGGGTTTAGTAG 1233
Query 1233 ATTTTGTATGGAAGGCTTGTGGttt-ttttttATGGAACTTGATATCCCGAGAATGTGGT 1291
|||||||||| ||||||||| ||| ||||||||||||||||||||||| | ||||||||
Sbjct 1234 ATTTTGTATGAAAGGCTTGTATTTTATTTTTTATGGAACTTGATATCCCAACAATGTGGT 1293
Query 1292 TGTTCTTGTTC 1302
|||||||||||
Sbjct 1294 TGTTCTTGTTC 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5