BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492226
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25910.1 | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 | c... 1345 0.0
> AT4G25910.1 | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 |
chr4:13163929-13165205 FORWARD LENGTH=1021
Length=1021
Score = 1345 bits (728), Expect = 0.0
Identities = 935/1028 (91%), Gaps = 41/1028 (4%)
Strand=Plus/Plus
Query 1 AAATCATCTCCAAGACGTATC-AT-CCATCATC-ATCCACCAATGAAAAGTTCTGTC--t 55
||||||||||||||||||||| || ||||||| |||||||||||||||||||| || |
Sbjct 1 AAATCATCTCCAAGACGTATCAATATCATCATCAATCCACCAATGAAAAGTTCTCTCTTT 60
Query 56 tttttt----C-C-TACTCTGTTCTCGGC-CCAGATTTTCCTGGG------aaaaaa-aa 101
|||||| | | |||||||||||| || |||| | ||||||| |||||| ||
Sbjct 61 TTTTTTCCCACTCTTACTCTGTTCTC-GCTACAGAATCTCCTGGGAAAAAAAAAAAAGAA 119
Query 102 aCTCAATCCACCCGAATTCCCCAAATCTTCATTGTTTCAGGAAATTTTCTCGATCGTGAA 161
||| |||||||||||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct 120 ACTTGATCCACCCGAATTCCCCAAATCTTCACAATTTCTGGAAACTCTCTCGATCGTGAA 179
Query 162 GCAGAAAAGTGAGGATCCAAATGGGTTCGGTTTCGGGTCAAACCCGAATTACAACGATGA 221
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 GCAGAAAAGTGAGGTTCCAAATGGGTTCTGTTTCGGGTCAAACCCGAATTACAACGATGA 239
Query 222 ACCTCTCGCTCTCATCAGCAGATAAGAATCCTAATTTCCGCTTATCGCTTCTAAATTCGA 281
|||||||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||| |
Sbjct 240 ACCTCTCGCTCTCAACAGCAGAGAAGAACCCTAATTTCCGCTCGTCGCTTCTCAATTCTA 299
Query 282 AGAACGCAATTTCAGATAGTTTAGGAGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 341
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 AGAACGCAATTTCAGATACTTTAGGGGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 359
Query 342 AATTTCAAAGAATACATTTTTCTTTAG-TTCAACACACTCGACCTTTGAGAACACGATCA 400
|||||||||||||||||||||| || | | |||||||||||||||||||| | | | |
Sbjct 360 AATTTCAAAGAATACATTTTTC-TTGGCTACAACACACTCGACCTTTGAG-A-A--A--A 412
Query 401 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 472
Query 461 GTGCTAGATGAAGTACGACCATCTTTAATGGCTGACGGAGGAAACGTGGCGCTGCACGAA 520
||| |||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 473 GTGTTAGACGAAGTACGACCATCTCTAATGGCCGACGGAGGAAACGTGGCGTTGCACGAA 532
Query 521 ATCGACGGACTTGTGGTTGTTCTAAAGCTACAAGGAGCTTGTGGCTCGTGTCCTAGCTCG 580
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 533 ATCGACGGACTTGTGGTGGTTTTAAAGCTACAAGGAGCTTGTGGTTCGTGTCCTAGCTCA 592
Query 581 TCAATGACATTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 640
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCAATGACGTTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 652
Query 641 TCCGTTGAGCAGTTTCTTGAATCCGAGACTGGCGGGTTAGAGCTGAACGATGAGAACATT 700
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 653 TCCGTTGAGCAGTTTCTTGAATCCGAGACAGGAGGTTTAGAGCTGAACGATGAGAACATT 712
Query 701 GAAAAGGTTCTCTCTGAGCTAAGGCCGTACCTATCCGGTACGGGAGGTGGGGGGCTTGAG 760
|| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 713 GAGAAGGTTCTCTCTGAGTTAAGGCCGTACCTATCCGGTACTGGAGGTGGGGGGCTTGAG 772
Query 761 CTGGTTGAGATTGATGGTTACGTGGTTAAGGTTCGGCTCACTGGACCAGCTGCTGGAGTC 820
| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 773 TTAGTTGAGATTGATGGTTACGTGGTCAAGGTTCGACTCACTGGACCAGCTGCTGGAGTC 832
Query 821 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAAACA-TTCCTTCTATTGGTGC 879
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 833 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAA-CAATTCCTTCTATAGGTGC 891
Query 880 AGTCCAGCTTCTAGAGTGACATTAACCTTTTTTATTTTGTAACTTCTTCTATTCATCTAC 939
|||||||||||||||||||||||||||||||| |||||||||||| || || ||
Sbjct 892 AGTCCAGCTTCTAGAGTGACATTAACCTTTTT-ATTTTGTAACTT-----AT--AT--AC 941
Query 940 AAGGCCTATTTTTGATTCTATATATTTTATTTCCAAATTCTAGAATTAGTACAATTAATA 999
|||||||||||||||||| ||||||||||||||||| || || ||||||||||| |||||
Sbjct 942 AAGGCCTATTTTTGATTCAATATATTTTATTTCCAA-TTATATAATTAGTACAACTAATA 1000
Query 1000 CAATGACC 1007
|||| |||
Sbjct 1001 CAATAACC 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5