BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492240
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25800.1 | Symbols: | Calmodulin-binding protein | chr4:131... 2937 0.0
AT5G57580.1 | Symbols: | Calmodulin-binding protein | chr5:233... 1155 0.0
> AT4G25800.1 | Symbols: | Calmodulin-binding protein | chr4:13124898-13127953
FORWARD LENGTH=2180
Length=2180
Score = 2937 bits (1590), Expect = 0.0
Identities = 1962/2136 (92%), Gaps = 47/2136 (2%)
Strand=Plus/Plus
Query 1 ACCAAACAAAACAGAGAATC-CAAGAGCAAACTATAGACTACTCAAACCACTTCCGTCGC 59
|||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||| |
Sbjct 47 ACCAAACAAAACAGAGAATCGC-AGAGCAAACTATAGACTACACAAAACACTTCCGTCAC 105
Query 60 CGGCCAATTTACTCAGGCGG-CGT-T---C-G-CAGATCTCAGAAATTAGGGtttttttt 112
|||| ||||||||||||||| | | | | || |||||||||| |||| ||||||
Sbjct 106 CGGCGAATTTACTCAGGCGGTAATCTCACCGGACATATCTCAGAAAAGAGGG--TTTTTT 163
Query 113 tAAATTGTCTAGAGGTAACAATCA-CATGAAGAGGAACTTAGAG-GGCAACGGTGACGAC 170
| ||| ||| ||||||| ||| | ||||||||||| || ||| || |||| |||||||
Sbjct 164 T--ATTTTCTGGAGGTAATAAT-ATTATGAAGAGGAATTTCGAGAGG-AACGATGACGAC 219
Query 171 AAGCCTGAGCGAAAGCGTCCTGCTCTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTTGAC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 AAGCCTGAGCGAAAGCGTCCTGCTCTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTTGAC 279
Query 231 AGTTTGCAGAAGCTTTGCTCGTCTTTGGAACCTATCCTCCGTCGAGTTGTTAGTGAGGAA 290
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 280 AGTTTGCAGAAGCTTTGCTCGTCTTTGGAACCTATCCTCCGCCGAGTTGTTAGTGAGGAG 339
Query 291 GTGGAACGTGCTTTGGCAAAATTAGCCCCTGCTAGGCTTATTGCAAGTTCTGGGTCTTCT 350
|||||||| ||||| |||||||||| |||| ||||||||| | ||||||||| | ||||
Sbjct 340 GTGGAACGGGCTTTAGCAAAATTAGTCCCTACTAGGCTTACTACAAGTTCTGTATTTTCT 399
Query 351 CCAAAACGAATTCGAGGTCTAGATGGCCGGAACTTGCAGCTGCATTTCAAGTCTAGGTTA 410
|| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 400 CCGAAACGAATTGGAGGTCCAGATGGCCGGAACTTGCAGCTGCATTTCAAGTCTAGATTA 459
Query 411 TCTCTCCCTTTATTCACTGGAGGAAGAGTGGAAGGAGAGCAAGGTGCTGCTATCCATGTT 470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 460 TCTCTCCCTTTATTCACTGGAGGAAGAGTGGAAGGAGAGCAAGGTGCTACTATCCATGTT 519
Query 471 GTATTGATTGATGCAAACACTCGCCGTCCTCTAACAGTTGGACCACAAGCTTCCCTGAAG 530
|||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 520 GTATTGATTGATGCAAACACGGGTCGTCCTGTAACAGTTGGACCAGAAGCTTCCCTGAAG 579
Query 531 CTTGAGGTTGTTGTGCTCGGGGGTGACTTTAACAATGAAGATGATGAAGATTGGACCCAT 590
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 580 CTTGAGGTTGTTGTTCTTGGGGGTGACTTTAACAATGAAGATGATGAAGATTGGACCCAG 639
Query 591 GAAGAATTTGAAAGTCATGTTGTAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACCGGA 650
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 640 GAAGAGTTTGAAAGTCATGTTGTAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACTGGA 699
Query 651 GATTTGTTTGTTGTTCTCAAGGAAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGAT 710
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GACTTGTTTGTTGTTCTCAAGGAAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGAT 759
Query 711 AATTCGAGCTGGATTCGAAGTCGCAAGTTCAGGCTTGGTTTAAGGGTACCCTCTGGGGAC 770
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 760 AATTCGAGTTGGATTAGAAGTCGCAAGTTCAGGCTTGGTTTGAGGGTACCCTCTGGGTAC 819
Query 771 TGTGATGGCATACGCATACGTGAAGCAAAGACTGAAGCTTTCTCTGTTAAAGATCACAGG 830
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 820 TGTGATGGCATACGTATACGTGAAGCAAAAACAGAAGCTTTCTCTGTTAAAGATCACAGG 879
Query 831 GGCGAATTGTACAAGAAGCATTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTGGAG 890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 880 GGCGAATTGTACAAGAAGCATTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTAGAG 939
Query 891 AAGATTGGTAAAGATGGGGCGTTCCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTG 950
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 940 AAGATTGGTAAAGATGGGGCGTTTCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTG 999
Query 951 GAAGGCTTTCTGAGAAAATTGGTCAGGGATTCTGCAAAACTACGAGCTATTCTTGGAAGT 1010
||||||||||||||| |||||||||| |||||| ||||| |||| |||||||||||||||
Sbjct 1000 GAAGGCTTTCTGAGACAATTGGTCAGAGATTCTACAAAATTACGGGCTATTCTTGGAAGT 1059
Query 1011 GGCATGTCAAATAAGATGTGGGAATTGCTAGTGGAGCACGCAAAAACATGTGTCCTAAGC 1070
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1060 GGCATGTCAAATAAGATGTGGGATTTGCTAGTGGAGCATGCAAAAACATGTGTCCTAAGC 1119
Query 1071 GGTAAGCTTTATATCTACTATACTGAAGATTCAAGGAATGTTGGCGTTGTGTTCAATAAC 1130
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1120 GGTAAGCTTTATATCTACTATACTGAAGATTCAAGGTCTGTTGGCGTTGTATTCAATAAC 1179
Query 1131 ATCTACGAGTTAAGTGGCCTCATTTCTGGAGACCAATACATATCTGCTGATTCACTCTCT 1190
||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1180 ATCTACGAGTTAAGTGGCCTCATAACTGAAGACCAATACTTATCTGCTGATTCACTCTCT 1239
Query 1191 GAAAGCCAAAAGGTATATGTGGATGGACTGGTGAAGAAAGCATATGGAAATTGGAACCAG 1250
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1240 GAAAGCCAAAAGGTATATGTGGATGGACTGGTGAAGAAAGCGTATGAAAATTGGAACCAG 1299
Query 1251 GTCGTGGAGTATGAAGGCAAATCTCTTTTAAATTTCAACCAGCCTGAGAGGTTGGATATT 1310
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 1300 GTCGTGGAGTATGAAGGCGAATCTCTTTTAAACTTAAACCAGCCTGAGAGGTTGGATATT 1359
Query 1311 TCTCAGACTGATCCTGTAACAGCTCTGGCAAGTTACTCTACCGTGCCTCTTAGTCAGTTT 1370
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1360 TCTCAGACTGATCCTGTAACAGCTCTGGCAAGTTACTCTACGGTGCCTCTTAGTCAGTTT 1419
Query 1371 CCTGAATTCGCAATTGAAGGCTATAATCAAACGCTGGCAACATCCC-AGCCTCATAACCC 1429
||||||||||| || ||||| ||||||||||||||| ||||| ||| | |||||||||||
Sbjct 1420 CCTGAATTCGCTATAGAAGGGTATAATCAAACGCTGACAACAGCCCTA-CCTCATAACCC 1478
Query 1430 ACAAGCACAATTCGATTTTGTTTCGCAGCAAGATCAGTTTATGGGAATGCAGCAACCGCA 1489
|||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||| ||
Sbjct 1479 ACAAGCACAATTTGATTTTGTTCCCCAGCAAGATCAGTTTATCGGAATACAGCAACCTCA 1538
Query 1490 AAGTCAA-CCTACCATAGAGAATGAAAATGTAACTGGGTTGGTTCTTGGTCCTCCATATT 1548
|| |||| || || ||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1539 AACTCAAACCAAC-ATAGAGAATGAAAATGTAACTAGGTTGGTTCTTGGTCCTCCACAAT 1597
Query 1549 CATCCACAGGTGGGTACCAAGACATCAAATCATCTGTTGACCAGGAAAATCTTAATCCTT 1608
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1598 CATCCACAGGTGGGTACCAAGACATCAAATCTTCTGCTGACCAGGAAAATCTTAATCCTT 1657
Query 1609 TCGAAGACTGGATAAACCCCAA-TGAGAACGACTTATTCGCAGAGGAAGAGATCCGGCAA 1667
|||||||||||| ||||| || |||||| ||||| ||| | ||||||||||||||||||
Sbjct 1658 TCGAAGACTGGACAAACCT-AAGTGAGAATGACTTTTTCTCGGAGGAAGAGATCCGGCAA 1716
Query 1668 AGAAGCCATGA-TATGTTAGCGAATGAGGACATGCAACAGCTTCTCCAGCTCTTTAGCAT 1726
| ||||||||| | |||||||||||||||||||||||||| || |||||| |||||
Sbjct 1717 ACAAGCCATGACT-TGTTAGCGAATGAGGACATGCAACAG-TT-----GCTCTTCAGCAT 1769
Query 1727 GGGAGGTGGCAATGGGGAAGATGGGTTTGCTTTCCCATCGTTTTTGCATAATACACCAAT 1786
|||||||||||| || |||||||| ||| |||||||||||||| |||| |||||||||||
Sbjct 1770 GGGAGGTGGCAAAGGAGAAGATGGTTTTACTTTCCCATCGTTTATGCAGAATACACCAAT 1829
Query 1787 GATGCAGGGATATAATGATGAGGACCGTGGGCGATCAGGAAAAGCGGTTGTTGGGTGGCT 1846
||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1830 GATGCAGGGATATGATGAGGAGGGCCGTGGGCGATCAGGAAAAGCGGTTGTTGGATGGCT 1889
Query 1847 GAAGATAAAAGCTGCTATGAGATGGGGATTCTTCATAAGGAGGAAAGCTGCTGAGAGAAG 1906
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1890 GAAGGTAAAAGCTGCTATGAGATGGGGATTCTTCATAAGGAGGAAAGCTGCTGAGAGGAG 1949
Query 1907 AGCACAGATTGTGGAGCTTGATGAT------GATG--AA-TGAATAGTCAGGTTGCTTGA 1957
||||||||||||||||||| ||||| |||| || |||||||||||||||||||
Sbjct 1950 AGCACAGATTGTGGAGCTTCATGATAATAACGATGGTAAATGAATAGTCAGGTTGCTTGC 2009
Query 1958 TAGTGTATAGAAGCCCTGTACAGTATAGGGATGTATAGCAACATCACTTACCGATATTCG 2017
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 2010 TAGTGTATAGAAGCCATGTACAGTTTAGGGATGTATAACAACATCACTTACCGATATG-G 2068
Query 2018 CATC-G-TCGCTATAGTTTATTAGACAGGAGGATAATCGATGAACCATATGAGAAAAAAT 2075
|| | | | | ||| |||||||||| || |||||||||||||||| |||||| |
Sbjct 2069 -ATTTGCTTGATTTAGCTTATTAGACAAGAATATAATCGATGAACCAT--GAGAAATT-T 2124
Query 2076 GAAGACTAACCTTCAGCAGCTAGACAAGAAGCTGAT 2111
|||||||||||||||||||| |||||||||||||||
Sbjct 2125 GAAGACTAACCTTCAGCAGCAAGACAAGAAGCTGAT 2160
> AT5G57580.1 | Symbols: | Calmodulin-binding protein | chr5:23314716-23318125
REVERSE LENGTH=2434
Length=2434
Score = 1155 bits (625), Expect = 0.0
Identities = 1015/1201 (85%), Gaps = 36/1201 (3%)
Strand=Plus/Plus
Query 141 AAGAGGAACTTAGA-GGGCAACGGTGACGA-CAAGCCTGAGCGAAAGCGTCCTGCTCTTG 198
|||||||| || || ||| |||| ||| || | ||||||||||||| || |||||| |||
Sbjct 249 AAGAGGAATTTGGATGGG-AACGATGATGATC-AGCCTGAGCGAAAACGCCCTGCTTTTG 306
Query 199 CTAGTGTGATTGTTGAGGCTCTGAAAGTTGACAGTTTGCAGAAGCTTTGCTCGTCTTTGG 258
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 307 CTAGTGTGATTGTTGAGGCTCTGAAAGTAGATAGTTTGCAGAAGCTTTGCTCCTCTTTGG 366
Query 259 AACCTATCCTCCGTCGAGTTGTTAGTGAGGAAGTGGAACGTGCTTTGGCAAAATTAGCCC 318
||||||| ||||| |||||||| || |||||| ||||||||||||| |||||| ||| ||
Sbjct 367 AACCTATTCTCCGCCGAGTTGTCAGCGAGGAACTGGAACGTGCTTTAGCAAAACTAGGCC 426
Query 319 CTGCTAGGCTTATTGCAAGTTCTGGG-TCTTCTCCAAAACGAATTCG-AGGTCTAGATGG 376
|||||||||||| || |||||| ||| ||||||||||| |||||| | ||||| |||||
Sbjct 427 CTGCTAGGCTTACTGGAAGTTC-GGGCTCTTCTCCAAAGCGAATT-GAAGGTCCGGATGG 484
Query 377 CCGGAACTTGCAGCTGCATTTCAAGTCTAGGTTATCTCTCCCTTTATTCACT-GGAGGAA 435
||||| || ||| |||| ||||| ||||||||||||||||| ||||||||| || ||||
Sbjct 485 TCGGAAGTTACAGTTGCACTTCAAATCTAGGTTATCTCTCCCGTTATTCACTGGGGGGAA 544
Query 436 GAGTGGAAGGAGAGCAAGGTGCTGCT-ATCCATGTTGTATTGATTGATGCAAACACTCGC 494
||| ||||||||||||||||||| | || |||||||| |||||||||||||||||| ||
Sbjct 545 -AGTAGAAGGAGAGCAAGGTGCTG-TGATTCATGTTGTCTTGATTGATGCAAACACTGGC 602
Query 495 CGTCCTCTAACAGT-TGGACCACAAGCTTC-CCTGAAGCTTGAGGTTGTTGTGCTCGGGG 552
||| || | | | ||| ||| | ||||| | |||||| | |||||||||| | ||
Sbjct 603 CGTGCTGTGGTA-TATGGTCCAGAGGCTTCGGC-AAAGCTTCACATTGTTGTGCTTGAGG 660
Query 553 GTGACTTTAACAATGAAGATGATGAAGATTGGACCCATGAAGAATTTGAAAGTCATGTTG 612
|||||||||||| ||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 661 GTGACTTTAACACTGAAGATGATGAAGACTGGACACAAGAAGAATTTGAAAGCCATGTTG 720
Query 613 TAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACCGGAGATTTGTTTGTTGTTCTCAAGG 672
||||||||||| |||||||||||| ||||| || ||||| ||| |||| |||||||
Sbjct 721 TAAAAGAGCGTTCAGGAAAGAGACCGTTGCTGACTGGAGAAGTGTATGTTACACTCAAGG 780
Query 673 AAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGATAATTCGAGCTGGATTCGAAGTC 732
||||||| || |||||||| ||| | |||||||||||||||||||| |||||||||||||
Sbjct 781 AAGGGGTTGGAACTTTGGGCGAGCTAGTTTTCACGGATAATTCGAGTTGGATTCGAAGTC 840
Query 733 GCAAGTTCAGGCTTGGTTTAAGGGTACCCTCTGGG-GACTGTGATGGCATACGCATACGT 791
| |||||| | ||||||||| |||| |||||| | ||||||||||| || || |||
Sbjct 841 GGAAGTTCCGACTTGGTTTACGGGTGGTTTCTGGGTG-TTGTGATGGCATGCGTATCCGT 899
Query 792 GAAGCAAAGACTGAAGC-TTTCTCTGTTAAAGATCACAGGGGCGAATTGTACAAGAAGCA 850
|| || ||||| ||||| ||| | |||||| |||||||||||||||||||||||||||||
Sbjct 900 GAGGCCAAGACGGAAGCTTTTGT-TGTTAAGGATCACAGGGGCGAATTGTACAAGAAGCA 958
Query 851 TTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTGGAGAAGATTGGTAAAGATGGGGC 910
||||||||||||| |||||||||| |||||||| ||||| ||||| || || ||||||||
Sbjct 959 TTATCCACCTGCTCTGAATGATGATGTGTGGAGATTGGACAAGATCGGCAAGGATGGGGC 1018
Query 911 GTTCCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTGGAAGGCTTTCTGAGAA-AAT 969
|||||||| | ||| || |||| ||||||| |||||| |||| ||||||||| |||
Sbjct 1019 ATTCCATAAAAAGCTTACTGCTGAAGGAATAAACACTGTAGAAGATTTTCTGAGAGTAAT 1078
Query 970 TGGTCAGGGATTCTGCAAAACTACG-AGCTATTCTTGGAAGTGGCATGTCAAATAAGATG 1028
||||| ||||||| ||||| |||| | ||||||||||||| ||||||||||| || |||
Sbjct 1079 -GGTCAAGGATTCTCCAAAATTACGTA-CTATTCTTGGAAGCGGCATGTCAAACAAAATG 1136
Query 1029 TGGGAATTGC--TAGTGGAGCACGCAAAAACATGTGTCCTA-AGCGGTAAGCTTTATATC 1085
||||| | || |||| ||||||||||| || ||||||| | ||| | ||||||||||||
Sbjct 1137 TGGGA-T-GCACTAGTAGAGCACGCAAAGACGTGTGTCC-AGAGCAGCAAGCTTTATATC 1193
Query 1086 TACTATACTGAAGATTCAAGGAATGTTGGCGTTGTGTTCAATAACATCTACGAGTTAAGT 1145
|||||| |||| |||||||||||||| || |||||||||||||| ||||| ||| ||||
Sbjct 1194 TACTATGCTGAGGATTCAAGGAATGTCGGTGTTGTGTTCAATAATATCTATGAGCTAAGC 1253
Query 1146 GGCCTCATTTCTGGAGACCAATACATATCTGCTGATTCACTCT-CTGAAAGCCAAAAGGT 1204
||||| ||||||||||| |||||| | |||||||||||||| | |||| |||||||||||
Sbjct 1254 GGCCTTATTTCTGGAGATCAATACTTCTCTGCTGATTCACT-TACTGATAGCCAAAAGGT 1312
Query 1205 ATATGTGGATGGACTGGTGAAGAAAGCATATGGAAATTGGAACC-AGGTCGTGGAGTATG 1263
|||||| || || ||||||||||||||||||| ||| ||||||| || || | |||||||
Sbjct 1313 ATATGTTGAGGGGCTGGTGAAGAAAGCATATGAAAACTGGAACCTAG-TCATAGAGTATG 1371
Query 1264 AAGGCAAATCTCTTTTAAATTTCAACCAGCCTGAGAGGTTG-GATATTTCTCAGACTGAT 1322
| || |||||||||||| | || || ||||| |||||||| | |||| |||| ||| ||
Sbjct 1372 ATGGAAAATCTCTTTTAGACTTGAAGCAGCCCCAGAGGTTGAG-TATTACTCACACTAAT 1430
Query 1323 C 1323
|
Sbjct 1431 C 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5