BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492262 Length=1713 Score E Sequences producing significant alignments: (Bits) Value AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |... 1437 0.0 > AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | chr4:13080901-13083197 REVERSE LENGTH=1844 Length=1844 Score = 1437 bits (778), Expect = 0.0 Identities = 881/930 (95%), Gaps = 10/930 (1%) Strand=Plus/Plus Query 793 GAGAAGGGGGGAAACCACTCGAAATTAACGTTAAAAAACTAGACAGCAAAGGGTTCTTTT 852 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct 916 GAGAAGGGGGGAAACCACTCGAAATCAACGTTAAAAAACTAGACAACAAAGGGTTCTTTT 975 Query 853 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTTTATCGGTCTTCCACAG 912 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 976 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTGTATCGCTCTTCCACAG 1035 Query 913 ACCCTCTACCAGAGCAGGAACACGAGTATCCCGCACCAGCTGCGTCTGAGAAGGCGGCAT 972 |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| Sbjct 1036 ACCCTCTACCAGAGCAGGAACATGAGTATCCCGCACCAGCTGCTTCTGACAAGGCGGCAT 1095 Query 973 TGTCAAAGCGCAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGCCCAGGTCGCAGTA 1032 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1096 TGTCAAAGCGGAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGTCCAGGTCGTAGTA 1155 Query 1033 GACTGATATGGACATTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTTCCGAGAT 1092 | ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1156 GGCTGATATGGACGTTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTCCCTAGAT 1215 Query 1093 GGGTGTTTCACATTGGTCAAAACACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1152 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1216 GGGTGTTTCACATTGGTCAAAATACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1275 Query 1153 AGGAGCGGAAGATACTGGAGAGAGGCCCCAAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1212 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1276 AGGAGCGGAAGATACTGGAGAGAGGCCCTGAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1335 Query 1213 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1336 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1395 Query 1273 AAGTCGATTGGAGAGGAAAGTTTGATCCATCTCTTCTTCCTCCTACACCTCCCCGAGAAC 1332 ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1396 GAGTCGATTGGAGAGGAAAGTTTGATCCATTTCTTCTTCCTCCTACGCCTCCCCGAGAAC 1455 Query 1333 AGCTCTTCGACAGGTATTGGTCACATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1392 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1456 AGCTCTTCGACAGGTATTGGTCGCATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1515 Query 1393 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1575 Query 1453 TGGCCGTGATGAAGCAAGCCACAACGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1512 |||| ||| |||||||| | |||| ||||||||||||||||||||||||||||||||||| Sbjct 1576 TGGCGGTGTTGAAGCAAACGACAATGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1635 Query 1513 CTGTTTTAAGTTTTGCCGCTTCAAAGTTGCTATCACACTTCATCTACAAGACATTCCATT 1572 |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 1636 CTGTTTTAAGTTTTGCAGCTTCAAAGTGGCTATCACACTTCATCTACAAGACATTCCATT 1695 Query 1573 ACCATGACTACAATCATGCTCTTGTTTGAAATGAATATTGGTGTTCGTA-T----ATATA 1627 ||||||||||||| |||||| |||||||||||| ||||||||||| ||| | ||||| Sbjct 1696 ACCATGACTACAACCATGCTGTTGTTTGAAATGTATATTGGTGTTTGTACTTCGTATATA 1755 Query 1628 TACTCTTTGGATATATTCAGTCTACATGGTGT---ACATAACACTTATACA-AACACTAA 1683 ||||| | |||| ||||||||| ||||||||| |||||||| ||||||| || ||||| Sbjct 1756 TACTCATCGGATGTATTCAGTCCACATGGTGTTGTACATAACAGTTATACAGAA-ACTAA 1814 Query 1684 TTCTTGTATCTATACCGTTTACTAATATTC 1713 |||||| |||||||||||||||||| |||| Sbjct 1815 TTCTTGAATCTATACCGTTTACTAACATTC 1844 Score = 1201 bits (650), Expect = 0.0 Identities = 759/809 (94%), Gaps = 17/809 (2%) Strand=Plus/Plus Query 1 CTTCTTCTCTCCGGTTGTCACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 60 |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 10 CTTCGTCTCTCCGGTTGTTACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 69 Query 61 CTCTTCCATCGCTCCGAATTCTCAAAACGAAACCAAGATTCAGATGTTCCTTCTCCAATC 120 ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||| Sbjct 70 CTCTTCCATCGCTCCGAATTCTCAATACGAAACCTCGTTTCAGATGTTCCTTCTCCAATC 129 Query 121 CAAGACTACCCATTTCTCCAAACTCCCTTATCATCGGCAAACCAAGTCGATTCACAACCG 180 |||| |||||||||||||| || |||||||||| | ||||| |||||||||||||||||| Sbjct 130 CAAGCCTACCCATTTCTCCTAATTCCCTTATCACCCGCAAATCAAGTCGATTCACAACCG 189 Query 181 CAGTATCATCACCA--A-CATCATCA-AC-C-AC-T--ACG-----T-CGCCGGAGTCTG 225 |||||||||||||| | |||||||| | | || | ||| | | ||||| ||| Sbjct 190 CAGTATCATCACCACCATCATCATCAGCCGCTACGTCAACGAATTCTCCACCGGAACCTG 249 Query 226 -AGACCCGATTCGAATCCGGGTCGGATAAGTTCGATTGGTACGCGAATTGGTATCCGGTG 284 || ||| ||||||| |||||||||||||||||||||||||||| |||||||| || ||| Sbjct 250 AAG-CCCTATTCGAACCCGGGTCGGATAAGTTCGATTGGTACGCTAATTGGTACCCAGTG 308 Query 285 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCACATGGGAAGAAAGTTATGGGGATTGAT 344 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 309 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCTCATGGGAAGAAAGTTATGGGGATTGAT 368 Query 345 TTGGTGGTTTGGTGGGATAGGAACGACAAGCAATGGAAAGTGATGGATGACACGTGTCCT 404 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 369 TTGGTTGTTTGGTGGGATAGGAACGAGAAGCAATGGAAAGTGATGGATGACACGTGTCCT 428 Query 405 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 488 Query 465 TATCATGGATGGTGCTTTAATGGATCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 524 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 489 TATCATGGATGGTGCTTTAATGGTTCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 548 Query 525 GATGGACCTCCGGTCCACACTTTCAGGCAAGCTTGTGTAGCTGTTTATCCAAGTACTGTG 584 ||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 549 GATGGTCCTCCGGTCCACACTTTCAAGCAAGCTTGTGTAGCTGTTTACCCGAGTACTGTG 608 Query 585 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 668 Query 645 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 728 Query 705 AATCGCGATATTCCTTACGGGTATGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 764 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 729 AATCGTGATATTCCTTACGGGTACGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 788 Query 765 GTTCCCTATGCACATTATGGACTAATGCG 793 ||||| ||||||||||||||||| ||||| Sbjct 789 GTTCCTTATGCACATTATGGACTGATGCG 817 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84688319415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5