BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492278 Length=1197 Score E Sequences producing significant alignments: (Bits) Value AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,... 1792 0.0 AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RR... 737 0.0 > AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13024571-13027440 FORWARD LENGTH=1362 Length=1362 Score = 1792 bits (970), Expect = 0.0 Identities = 1132/1208 (94%), Gaps = 20/1208 (2%) Strand=Plus/Plus Query 1 CTTGTTCTAGGGCTTCCACGCGACTACGACTGCTAAATCAATCATTCGACAGGAAGCATG 60 ||| |||||||||||||||||||||||| |||| || |||||||| |||||||||||| Sbjct 59 CTTCTTCTAGGGCTTCCACGCGACTACGCCTGC-CAA--AATCATTCTACAGGAAGCATG 115 Query 61 AAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCTCGAACGCCTT 120 |||||||||||||||||||| |||||||||||||| || || ||||| || ||||| || Sbjct 116 AAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGCGAAGGTGACCTGGAACGACTA 175 Query 121 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTGTAC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 176 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTATAC 235 Query 181 ATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-TATTGAATTTGG 239 |||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||| Sbjct 236 ATGGAAGATGAAAGGGATGCGGAAGATGCCATCCGAGCACTTGACCGCT-TTGAATTTGG 294 Query 240 GCGTAAGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGGAGGTGATAGAAG 299 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 295 GCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGAGTGAACGTGGAGGTGATAAAAG 354 Query 300 ATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 359 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 ATCTGGTGGTGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 414 Query 360 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAGACACTTTGAGCCGTA 419 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 415 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAAACACTTTGAGCCGTA 474 Query 420 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATCCAATATGAGGCACA 479 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 475 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTTGCATTTATCCAGTACGAGGCACA 534 Query 480 AGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTGATGGATAAGGTGAT 539 |||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 535 AGAGGATGCCACCAGAGCATTGGATGCTTCAAATAACAGTAAGCTGATGGATAAGGTGAT 594 Query 540 CTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGACACAGTCCTGAAAG 599 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 595 CTCGGTGGAGTATGCTGTGAAGGATGATGATGCTAGAGGAAATGGACACAGTCCTGAAAG 654 Query 600 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCTTACAAAAGAGAAAG 659 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 655 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGATCACCTAGTCCTTACAAAAGAGAAAG 714 Query 660 AGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAAAAC 719 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 715 AGGAAGCCCTGATTATGGCCGAGGAGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAGGAC 774 Query 720 CAGTCCTGACTATGGTCGAAGACGTAGCCAAAGTCCTTACAAGAAATCAAGGCGTGGCAG 779 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 775 CAGTCCTGACTATGGTCGAAGACGTAGCCCAAGTCCTTACAAGAAATCAAGACGTGGCAG 834 Query 780 CCCCGAGTACGGCCGCGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGT 839 |||||||| || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 TCCCGAGTATGGTCGTGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGC 894 Query 840 AAGCCCTA--A-GTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 896 |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 AAGCCCTACTAAGTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 954 Query 897 CAGCCCGTTTAAGAAGGAAAGTCCGAGAAATGGGGTTGGTGAAGTTGATAGTCCCAACGA 956 ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| || Sbjct 955 CAGCCCGTTCAAGAAGGAGAGTCCGAGAAATGGGGTTGGTGAAGTTGAAAGTCCCATTGA 1014 Query 957 AAGGAGGGAGAGATCAAGGTCTAGCCCGGAGAATGGCCAAGTTGAAAGCCCTGGCTCAAT 1016 |||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1015 AAGGAGAGAGAGATCGAGGTCTAGCCCCGAGAATGGCCAAGTTGAAAGCCCTGGGTCAAT 1074 Query 1017 AGGAAGAAGAGACAGCGATGGTGGTTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1076 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1075 AGGAAGAAGAGACAGTGATGGTGGGTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1134 Query 1077 GTCTC---GTTCGCCAGCAGCTGACGAGTGATGAA-AGTGGATCCACAAACTCTCTATCA 1132 ||||| |||||||| ||||||||||||||| || ||||||||||||| ||||||||| Sbjct 1135 GTCTCCTCGTTCGCCACCAGCTGACGAGTGAT-AAGAGTGGATCCACAA--TCTCTATCA 1191 Query 1133 GAGTTAGAATGTTGTAACTGTTTGTAGTCAAC---GCTATGTTTGTCGTGATTAGTTTTT 1189 ||| || |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1192 AAGT-AGGATGTTGTAACTGTTTGTAGTCAACAACGCTATGTC-GTCGTGATTAGTTTTT 1249 Query 1190 GTCTTTTG 1197 ||| |||| Sbjct 1250 GTCGTTTG 1257 > AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21130320-21133551 FORWARD LENGTH=1426 Length=1426 Score = 737 bits (399), Expect = 0.0 Identities = 618/722 (86%), Gaps = 21/722 (3%) Strand=Plus/Plus Query 51 AGGAAGCATGAAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCT 110 ||||| ||||||||| ||||| || || || |||||||||||||| |||||| ||||||| Sbjct 113 AGGAATCATGAAGCCTGTCTTTTGCGGAAACTTTGAGTATGATGCTCGTGAGAGTGATCT 172 Query 111 CGAACGCCTTTTCAGGAAA-TACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 169 || || ||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 173 TGAGCGGCTTTTCA-GAAAGTACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 231 Query 170 CTTTTGTGTACATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-T 228 ||||||| || ||||||||||||||||||||||||||||| || ||||| ||||| || | Sbjct 232 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCAATTCGAGCGCTTGATCGCT 291 Query 229 ATTGAATTTGGGCGTA-AGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGG 287 |||||| ||| || | ||| ||| ||||| |||||||| ||||| |||| ||| ||||| Sbjct 292 -TTGAATATGGTCGCACAGG-ACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGG 349 Query 288 AGGTGATAGAAGATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAA 347 ||||| | ||||||| ||||| ||| |||||||| || || || ||||||||||||| Sbjct 350 AGGTGCTGGAAGATCAGGTGG---TTCGAGGAGATCATCTTCTGGCTTGAGACCTTCCAA 406 Query 348 GACTCTCTTTGTGATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAG-AGAGAC 406 |||||| |||||||| ||||| ||||| | || |||||||| ||||| || | |||| | Sbjct 407 GACTCTGTTTGTGATCAACTTCGATGCACAAAACACTAGGACTCGGGA-CTTGGAGAGGC 465 Query 407 ACTTTGAGCCGTATGG-AAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATC 465 |||||||||||||||| ||| || || || ||||| ||||| |||||||| ||||| ||| Sbjct 466 ACTTTGAGCCGTATGGTAAA-ATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTCATC 524 Query 466 CAATATGAGGCACAAGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTG 525 ||||||||||||||||| ||||| || ||||||||||| ||||||||| |||||||||| Sbjct 525 CAATATGAGGCACAAGAAGATGCTACCAGAGCACTGGATGCTACAAATTCCAGTAAGCTG 584 Query 526 ATGGATAAGGTGATCTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGA 585 ||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| |||||| Sbjct 585 ATGGATAAGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCAAGAGGAAATGGA 644 Query 586 CACAGTCCTGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCT 645 |||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 645 TACAGTCCTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGATCACCAAGTCCT 704 Query 646 TACAAAAGAGAAAGAGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTAC 705 |||| ||||||||| ||||| ||||| |||||||||||||||||||| || ||| | || Sbjct 705 TACAGAAGAGAAAGGGGAAGTCCTGACTATGGCCGAGGTGCTAGTCCAGTAGCT-C--AC 761 Query 706 AGAAAGGAAAAA-ACCAGTCCTGACTATGGTCG---AAGACGTAGCCAAAGTCCTTACAA 761 | ||||| ||| || |||||||| |||||||| |||||| |||| || |||||||| Sbjct 762 A-AAAGGGAAAGGACTAGTCCTGATTATGGTCGTGGAAGACGCAGCCCCAGCCCTTACAA 820 Query 762 GA 763 || Sbjct 821 GA 822 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58784838195 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5