BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492304
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25290.1 | Symbols: | DNA photolyases;DNA photolyases | chr... 1256 0.0
> AT4G25290.1 | Symbols: | DNA photolyases;DNA photolyases | chr4:12941242-12944994
REVERSE LENGTH=2323
Length=2323
Score = 1256 bits (680), Expect = 0.0
Identities = 779/827 (94%), Gaps = 6/827 (1%)
Strand=Plus/Plus
Query 49 AACCAATGCAGATGTTGTTCGTCTTCGGCAACGAATGAAGGTTCCACGGCGGTTGTGTGG 108
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACCGATGCAAATGTTGTTTGTCTTCGGCAACGAATGAAGGTTCCACGGCGGTTGTGTGG 120
Query 109 TTTAAACATGACCTTCGTGTTGATGATCATCCTGGCCTCCTCGCTGCGTCCAAGCACAGT 168
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTTAAACATGACCTACGTGTTGATGATCATCCTGGCCTCCTCGCTGCGTCTAAGCACAGA 180
Query 169 GCCGTCATACCTCTCTACGTCCTCGATCGTCGCATTCTATCGAGATACACAACGGACACC 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGTCATACCTCTCTACGTCCTCGATCGTCGCATTCTATCGAGATACACAACGGACACT 240
Query 229 TTAGAGCTAGCTATTATAGCCTTGGAAGACTTGAGAAAAACCTTGAAGAAGCAAGGATCA 288
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTAGAGCTAGCTATTATAGCATTGGAAGATTTGAGAAAAACCTTGAAGAAGCAAGGATCA 300
Query 289 AATCTGATGCTCAGATACGGGAATGCAGAAAATGTCATTGCAGATCTTGTCAAAGAGGTA 348
||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 301 AATCTTATGCTCAGATATGGGAATGCAGAGAATGTCATTGAAGATCTTGTCAAAGAGGTG 360
Query 349 CGAGCTCATTCTGTCTTTGTGGAAGAAGAGGTAGAATACCATCTGTGTGATGTTTTGGAC 408
||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 361 CGAGCTCCTTTTGTCTTTGTGGAAGAAGAGGTAGAATACCATCTGTGTGAGGTTTTAGAC 420
Query 409 GGTGTTAAGAAAAAATTGGAAGGCT-TTTCTTTATCTGGAGAA-CAACCAAGGATTGTTT 466
| ||| ||||| ||||||||||| | ||||||||||||||||| || || |||||||||
Sbjct 421 GCTGTAAAGAATAAATTGGAAGG-TGTTTCTTTATCTGGAGAATCA-CCGAGGATTGTTG 478
Query 467 TTTGGCGGAGTCCTTTTTACGAGAGCCAAAATTTGACGGATCTACCACAATCTTGGGAAG 526
|||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 479 CTTGGCGTACTCCTTTTTACGAGAGCCAAAATTTGACAGATCTACCACAATCTTGGGAGG 538
Query 527 AGTTTAAGAAACTAAAGCTGCCTATCTCTTTGCCAGTTCCTGCAGCAAGATTTTCATCCC 586
||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 539 AGTTTAAGAAACTGAAGCTGCCTCTCACTTTGCCAGTTCCTGCAGCAAAATTTTCATCTC 598
Query 587 CAGGAAGTGAATTGCAATGGGGTTCTGTGCCAACGCTCGATGACCTGAAGGACTATTTGA 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGAAGTGAATTGCAGTGGGGTTCTGTGCCAACGCTCGATGACCTGAAGGACTATTTGA 658
Query 647 AGGAAAGCTTATGCGAGAA-AGAAAATAGCTGGAGGGAAATGGCACAGGCATCTGCTGAA 705
||||||||||||| || || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 AGGAAAGCTTATGGGA-AATAGAAAATAGTTGGAGGGAAATGGCACAGGCATCTGCTGAA 717
Query 706 AGAGTATTAATGGAAAGGCTTGGTAATTTGAAGGAAAGCAGTATGGAGCCAATTGTTGAT 765
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 AGAGTATTAATGGAAAGGCTTGGTAACTTGAAGGAAAGCAGTATGGAGCCAATTGTTGAT 777
Query 766 GGAAGTTTAGGGAAGAAGGTTGACAATTCTGCTTTTGTCACAAGTAAAAGAGATACTGTT 825
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 778 GGAAGTTTAGGGAAGAAGGTTGATAACTCTGTTTTTGTCACAAGTAAAAGAGATACTGTT 837
Query 826 GGAGGTGGAAATGAGGCTGTACTCAATGCTCTAGCAGGATACTTGAG 872
|||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 838 GGAGGTGGAAATGAGGTTGTACTGAATGCTCTAGCAGGATACTTGAG 884
Score = 752 bits (407), Expect = 0.0
Identities = 449/470 (96%), Gaps = 0/470 (0%)
Strand=Plus/Plus
Query 992 AGTACACAGTGGTTGGTAATGAAGGCCCTGCCGTTCTTCTTGTGCATGGCTTTGGTGCTT 1051
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1223 AGTACACAGTGGTTGGTAATGAAGGGCCTGCCGTTCTTCTTGTGCATGGCTTTGGTGCTT 1282
Query 1052 TTCTAGAGCATTACCGTGACAATGTAGACAACATTGTAAATAGCAAAAACCGAGTATGGA 1111
|||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1283 TTCTAGAGCATTACCGCGATAATGTAGACAACATCGTAAATAGCAAAAATCGAGTATGGA 1342
Query 1112 CCATTACAGTCTTGGGTTTTGGAAAATCAGAGAAGCCAAATATCATTTACACCGAGCTTT 1171
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CCATCACAGTCTTGGGTTTTGGAAAATCAGAGAAGCCAAATATCATTTACACCGAGCTTT 1402
Query 1172 TGTGGGCTGAATTGCTGCGGGATTTTATGATTGAAGTAGTTGGGGAACCAGCACATTGCG 1231
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1403 TGTGGGCTGAATTACTGCGGGATTTCATGGCTGAAGTAGTTGGGGAACCAGCACATTGCG 1462
Query 1232 TAGGGAACTCAATCGGTGGGTATTTCGTTGCATTAATGGCCTTTCTTTGGCCGGCCTTGG 1291
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1463 TAGGGAATTCAATCGGTGGGTATTTCGTTGCATTAATGGCCTTTCTTTGGCCGGCGTTGG 1522
Query 1292 TTAAGTCCGTCGTCCTTGTTAACAGTGCTGGCAATGTAGTACCTGGATACTCTCCTCTCC 1351
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1523 TTAAGTCCGTTGTCCTTGTTAACAGTGCCGGCAATGTGGTACCTGGATACTCTCCTCTCC 1582
Query 1352 CAATCTCTAGAGAAAGGGGAGTTCCATTTGGTGCACAACTGGGTGCTCGACTTCTTCTCT 1411
||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||
Sbjct 1583 CAATCTCTAGAGAAAGGCGAGTTCCATTTGGTGCACAATTTGGTTCTCGACTTCTTCTCT 1642
Query 1412 TTTTCCTACAATTCAATGTCAAAAGGCTATTAAAGGATTGTTATCCAGTT 1461
||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1643 TTTTCCTACAACTCAATGTCAAAAAGCTATTAAAGGATTGTTATCCAGTT 1692
Score = 196 bits (106), Expect = 5e-49
Identities = 118/124 (95%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 871 AGAAGAAGTGTTCACTATGAAGCAATCGAGTATGAAAAAGAAAGGAATGCTGGATTTATT 930
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGAAGAAGTGTCCACTATGAAGCAATCGAGTATGAAAAAGAAAGGAATGCTGGATTTATT 1071
Query 931 TCTCCCTTTGGATATTCAGCTGCCACCGTGTCTGCTGCAACCGATGCTGTGCGCTCTATG 990
||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 1072 TCTCCTTTTGGATATTCAGCTGCCACAGTGTCTGCTGCAACTGATGCTGTATGCTCTATG 1131
Query 991 GAGT 994
||||
Sbjct 1132 GAGT 1135
Score = 130 bits (70), Expect = 5e-29
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 1462 GGG-ATGAAAGATCCCATATCGGATCCGCAGAAGAAAGTAGCCTTACTGAAGGAGCTTTG 1520
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGGAATGGAAGATCCCATATCGGATCCGCAGAAGAAAGTAGCCTTACTGAAGGAGCTTTG 1910
Query 1521 TCCAGCGATGGTGATTAAGCAAA 1543
||||||||||||||| ||| |||
Sbjct 1911 TCCAGCGATGGTGATAAAG-AAA 1932
Score = 122 bits (66), Expect = 8e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1587 AGGTCACTGTCCCCACGATGAAATCCCAGAAGAGGTAAATCCGATTATCTGCGAATGGAT 1646
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1941 AGGTCACTGTCCCCACGATGAAATCTCAGAAGAGGTAAATCCGATTATCTGCGAATGGAT 2000
Query 1647 AGTGAAGGCCAC 1658
|||||||| |||
Sbjct 2001 AGTGAAGGTCAC 2012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82730498160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5