BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492320 Length=1016 Score E Sequences producing significant alignments: (Bits) Value AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase ... 1435 0.0 > AT4G25130.1 | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898591-12900064 REVERSE LENGTH=1054 Length=1054 Score = 1435 bits (777), Expect = 0.0 Identities = 946/1026 (92%), Gaps = 18/1026 (2%) Strand=Plus/Plus Query 1 AAAGTTCCTAATTTCACCACGTCACTGCTTTGATAATGCAGGTCATCGTCGCctctcctc 60 |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 32 AAAGTTCCAAATTTCACCACGTCACTGCTTTGATAATGCAGGTCCTCGTCGTCTCTCCTC 91 Query 61 cgctcatctccgccgcttctctctctaaacctttccattctctctctaaggccgcactct 120 |||||||| ||||||| ||||||||||||||| || ||||||||||||| |||||||||| Sbjct 92 CGCTCATCGCCGCCGCATCTCTCTCTAAACCTCTCAATTCTCTCTCTAAAGCCGCACTCT 151 Query 121 ctttctctAGAGCCAAACCCATTTGCCCTTTCCCCCAAA-C-CTC-ACGACCCATCTCCG 177 ||||||| ||||||||||||||||| |||||||| |||| | ||| |||||| ||||||| Sbjct 152 CTTTCTCCAGAGCCAAACCCATTTGTCCTTTCCCTCAAACCTCTCGACGACCAATCTCCG 211 Query 178 TCTACAAATCCCCGATGAACAACCTCTTCAACAGGCTCGGTTTCGGGTCTCGTCCCCAAG 237 | ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| |||| Sbjct 212 TATACAAATCCCCAATGAACAACCTTTTCAACAGACTCGGATTCGGGTCTCGTCCTCAAG 271 Query 238 CTCAAGTC-GACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGACGATGTTCCGTCG 296 | |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 272 CCCAAG-CTGACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGATGATGTTCCGTCT 330 Query 297 CCAGGTCAGCAATTCGCGCAATTCGGCGCCGGTTGCTTCTGGGGAGTGGAGCTAGCTTAC 356 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 331 TCAGGTCAGCAATTCGCGCAATTTGGCGCCGGTTGTTTCTGGGGAGTGGAGCTAGCTTAC 390 Query 357 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCCTCATGCACAAT 416 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 391 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCATCGTGCACAAT 450 Query 417 CCGAGTTACGAAGATGTCTGTACTGGCACGACGGGACACAACGAGGTTGTTAGAGTTCAG 476 ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 451 CCGAGTTACGAGGATGTCTGTACTGGCACTACGGGACATAACGAGGTTGTTAGAGTTCAG 510 Query 477 TACGATCCTAAAGAGTGTAGCTTTGAGAGCTTGCTCGATGTTTTCTGGAATCGCCATGAT 536 || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 511 TATGATCCCAAAGAGTGTAGCTTTGAGAGCTTGCTTGATGTTTTCTGGAATCGTCATGAT 570 Query 537 CCAACCACCTTGAATCGTCAGGG-GGGCGATGTGGGAACTCAGTATCGATCAGGCATATA 595 ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| Sbjct 571 CCAACCACCTTGAATCGTCAGGGTGGG-GATGTGGGAACGCAGTATCGATCAGGTATATA 629 Query 596 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCCGTTGAGAAACAGCAGAAGAT 655 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 630 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCTGTTGAGAAACAGCAGAAGAT 689 Query 656 ATTGAACAAGAAGATTGTGACAGAGATACTTCCCGCGACAAAATTCTACAGAGCAGAAAA 715 ||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 690 ATTGAACAAGAGGATTGTCACAGAGATACTTCCCGCTACGAAATTCTACAGAGCAGAAAA 749 Query 716 TTACCACCAGCAATACCTGGCAAAAGGCGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 775 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 750 TTACCACCAGCAATACCTGGCAAAAGGGGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 809 Query 776 AGGTTGCAAGGATCCAATCCGATGTTACGGCTAAGAAAATAAGTCAGTCTTCCCTCAAGC 835 |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| Sbjct 810 AGGTTGCAAGGATCCAATCCGATGCTATGGCTAAGAAACTAAGTCAGTCTTCCCTCAAGC 869 Query 836 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTGT 895 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 870 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTTT 929 Query 896 CTGGTCTTTGTTATGTAACCATTGGTAATGATGCGTCATATGCTTGCTTATAAATTT-GT 954 || |||||||||||| ||||| |||| ||||||| || ||||||| | || ||| | Sbjct 930 CTTGTCTTTGTTATGCAACCAATGGTTATGATGCATCCTATGCTTA-T-ATGAATCAAG- 986 Query 955 G-TTT--CAAAAACAACCAT-AAGTTTGGTACTACAGTACTGGTCCATACAATTTGGGAA 1010 | ||| | ||| ||| | || |||| ||||||||||||||| |||||||||||||| Sbjct 987 GCTTTGTCCAAATCAATT-TCAA-TTTGATACTACAGTACTGGTA-ATACAATTTGGGAA 1043 Query 1011 GTCCTC 1016 || ||| Sbjct 1044 GTTCTC 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49782039677 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5