BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492323 Length=1696 Score E Sequences producing significant alignments: (Bits) Value AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:128875... 2069 0.0 > AT4G25110.1 | Symbols: AtMC2, MC2 | metacaspase 2 | chr4:12887518-12890262 REVERSE LENGTH=1786 Length=1786 Score = 2069 bits (1120), Expect = 0.0 Identities = 1365/1477 (92%), Gaps = 41/1477 (3%) Strand=Plus/Plus Query 244 AAAAGAATGCTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTCCCTCCC 303 |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 304 AAAATAATGTTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTTCCTCCC 363 Query 304 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCTCCCGATCCC 363 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 364 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCCCCCGAGCCC 423 Query 364 CGTCTCCAATCCCACGCTTCGGCCAGCCCTTTTCCTTTCCCAAACTCATCTCCCGTAACT 423 ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| ||| Sbjct 424 CGTCTCCAATCTCACGCGTCGGCGAGCCCTTTTCCTTTCCCCAACTCATCT-CCG----- 477 Query 424 CCAGCACCATCCGCTTCCACCTACCCGCCGCCATCACCGTCTCCGTTCACTCACGCGCCG 483 || |||||| ||| || ||||||||||||| |||| ||||||| ||||||||||||| Sbjct 478 ---GCTCCATCCACTTTCATCTACCCGCCGCCAACACCTTCTCCGTACACTCACGCGCCG 534 Query 484 CCTGCACCGTCTCCATTCAACCACGCGCCTCCAGA-ACATTATCCGTTCACTCCCGCGCC 542 | ||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||| Sbjct 535 CATGCACCGTCTCCATTCAACCACGCGCCTCCAGATTC-TTACCCGTTCACTCACGCGCC 593 Query 543 GT-CAGCACCGTCTCCATTTAACCACGCGCCGCCGGGTCCTCCACCACCCGTACACGGAC 601 | ||||| |||||||||| |||||||||||||||||||||||||| || ||||| |||| Sbjct 594 -TCCAGCATCGTCTCCATTCAACCACGCGCCGCCGGGTCCTCCACCGCCGGTACATGGAC 652 Query 602 AGAAGCGAGCGGTGATCGTGGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 661 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 653 AGAAGCGAGCGGTGATAGTCGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 712 Query 662 GTATCAATGACGCAAAGTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 721 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 713 GTATCAATGACGCAAACTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 772 Query 722 CTTGCATTCTTATGCTCACCGAAGAAGAAACGGACCCAATGAGATGGCCAACGAAGAACA 781 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 773 CTTGCATTCTTATGCTCACCGAAGAAGAAGCGGACCCAATGAGATGGCCAACGAAGAACA 832 Query 782 ACATAACGATGGCGATGCATTGGCTAGTTGTAAGCTGCAAACCGGGAGATTCCCTCGTCT 841 ||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 833 ACATAACAATGGCGATGCATTGGCTTGTTCTTAGCTGCAAACCGGGAGATTCCCTCGTCT 892 Query 842 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACTACAACGGCGACGAGGTTGACGGCT 901 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 893 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACGACAACGGCGACGAGGTTGACGGCT 952 Query 902 TCGACGAGACTCTTCTCCCGGTGGACTACATGACTTCAGGTGTCATCGTGGACGATGAGA 961 |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 953 TCGATGAGACTCTTCTCCCGGTGGACCACAGGACTTCAGGTGTCATCGTGGACGATGAGA 1012 Query 962 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTCAAGCTCCATGCCATCGTCGACG 1021 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1013 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTTAAGCTCCATGCCATCGTCGACG 1072 Query 1022 CTTGTCATAGTGGTACCGTCATGGACTTGCCTTATCTTTGTAGAATGGATAGGCTCGGAA 1081 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1073 CTTGTCATAGTGGTACCGTCATGGACTTACCTTATCTTTGTAGAATGGACAGGCTCGGAA 1132 Query 1082 ACTATGAATGGGAGGACCATCGGCCTCCATCAGGAATGTGGAAAGGTACAAGTGGCGGTG 1141 ||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||||| Sbjct 1133 ACTATGAATGGGAAGACCATCGGCCTAAAACAGGAATGTGGAAAGGTACGAGTGGCGGTG 1192 Query 1142 AAGTCTTCTCTTTCACGGGCTGCGATGATGACCAGACCTCAGCTGACACTCCGCAATTGT 1201 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1193 AAGTCTTCTCCTTCACAGGCTGCGATGATGACCAGACCTCGGCTGACACTCCGCAATTGT 1252 Query 1202 CAGGGAGTGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGCGGCC 1261 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1253 CAGGGAGCGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGTGGCC 1312 Query 1262 ACGGGACGACTTATGGGAGCTTACTGAATGCAATGAGATCAACGGTTCACGAGATTTTCG 1321 |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct 1313 ACGGGATGACTTATGGGAGCTTGCTGAATGCAATGAGATCAACGGTTCATGAGATCTTCG 1372 Query 1322 ACAAAGACAAAGGTAGAGAGCTTGTGGAAGTGGAAGGCGCTGATCTTCTCACTACTCTTC 1381 ||||| ||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| Sbjct 1373 ACAAAAACAAAGGTAGAGAGCTTGTGGAAGTGGGAGGTGCTGATTTTCTCTCTACTCTTC 1432 Query 1382 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCTTGATGAGGAAGAGGAGGTAAACCAAGCCC 1441 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1433 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCCTGATGAGGAAGAGGAAGTAAACCAAGCCC 1492 Query 1442 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGACGCATTTGATGTATATGAGAAGC 1501 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1493 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGAGGCATTTGCTGTATATGAGAAGC 1552 Query 1502 CCTTTTCTTTGTAATATCACCTTAAGAGGAGGACAAAAGAATGAGTATGaaa------a- 1554 |||| ||||| |||||||||||||||| || |||||||||||||||||||| | Sbjct 1553 CCTTCTCTTTATAATATCACCTTAAGA--AG-ACAAAAGAATGAGTATGAAATTTCGGAG 1609 Query 1555 a--aaC---------TTTATTGAGCTTGGAGTGAAG--ATATAT--GGGGCATGATCATA 1599 | ||| ||||||||||||||||||||| |||||| |||||| ||||||| Sbjct 1610 ACCAACAAAAAAAACTTTATTGAGCTTGGAGTGAAGCTATATATATGGGGCAAGATCATA 1669 Query 1600 ATATGTTTATATCGGCCTTTTCATTAAGTGAAAATAAAAGTTATGAGAAATTTTATCAAA 1659 ||||||||||||||||||||||||||| ||||||||| |||| |||||||| | |||||| Sbjct 1670 ATATGTTTATATCGGCCTTTTCATTAACTGAAAATAATAGTTTTGAGAAATAT-ATCAAA 1728 Query 1660 TGGTAAACAGACATCATCTTT-AAAAATTGCCATCAA 1695 ||||||||||||||||||||| |||||| ||||||| Sbjct 1729 TGGTAAACAGACATCATCTTTGAAAAATA-CCATCAA 1764 Score = 237 bits (128), Expect = 3e-61 Identities = 217/256 (85%), Gaps = 21/256 (8%) Strand=Plus/Plus Query 1 GAAGGAAGAATTATAATTCTCAACTTGCTAATTTAATTTGTGTCGTATACATTGTATATA 60 ||||||| ||||||||||| |||||||||||||||| ||| | | ||||||||| Sbjct 4 GAAGGAACAATTATAATTCGCAACTTGCTAATTTAACTTG-G--G------TTGTATATA 54 Query 61 TGCCAGTTGAGACGACTT-GTTTGATCATCaaa-aaaaGTCTTGACGAATACATAAGCCT 118 ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||| Sbjct 55 TGCAAGTTGAGACGACTTCATTTGATCATCAAACAAAAGTCTTGACGAATACATTAGCGG 114 Query 119 A-AAGTCGT---CTCTTAC-TCAGCATTTTCTT-CTTCACCTTATTGGCATCTTCTTCTA 172 | ||| | | || | | || |||||||| ||| ||||||||||||||||||||| Sbjct 115 ATAAG-CTTAAAGTCGT-CGAAAGAATTTTCTTCCTT-GCCTTATTGGCATCTTCTTCTA 171 Query 173 AAGTTCCAATGCTT-GATCATTGATGATTTTCCCAGCATCAGAACCGAAAGGCTATAATC 231 |||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 172 AAGTTCCAATGCTTTGATCATTGATGATTTTCCCAGCATCAGAAACTAAAGGCTATAATC 231 Query 232 TGCAACTTTCAAAAAA 247 |||||||||||| ||| Sbjct 232 TGCAACTTTCAAGAAA 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83834910150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5