BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492324
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase 1... 1103 0.0
> AT4G25100.1 | Symbols: FSD1, ATFSD1 | Fe superoxide dismutase
1 | chr4:12884300-12886695 REVERSE LENGTH=1182
Length=1182
Score = 1103 bits (597), Expect = 0.0
Identities = 665/696 (96%), Gaps = 11/696 (2%)
Strand=Plus/Plus
Query 91 AGCTTCAGTTTA-AAAGAATGGCTGCTTCAAGTGCTGTCACCGCAAACTACGTCCTCAAG 149
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGCTTCA-ATTACAAAGAATGGCTGCTTCAAGTGCTGTCACCGCAAACTACGTCCTCAAG 236
Query 150 CCACCTCCATTCGCACTGGATGCTTTGGAGCCGCATATGAGCAAACAAACTCTGGAGTTT 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCACCTCCATTCGCACTGGATGCTTTGGAGCCGCATATGAGCAAACAAACTCTGGAGTTT 296
Query 210 CACTGGGGAAAGCATCACAGAGCTTACGTGGACAACCTCAAGAAACAGGTTCTTGGAACC 269
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACTGGGGAAAACATCACAGAGCTTACGTGGACAACCTCAAGAAACAGGTTCTTGGAACC 356
Query 270 GAGCTTGAAGGCAAGCCCTTAGAGCACATTATCCACAGCACTTACAACAATGGTGATCTC 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAGCTTGAAGGCAAGCCCTTAGAGCACATTATCCACAGCACTTACAACAATGGTGATCTC 416
Query 330 CTCCCTGCTTTCAACAACGCTGCTCAGGCGTGGAACCACGAGTTCTTCTGGGAGTCAATG 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTCCCTGCTTTCAACAACGCTGCTCAGGCGTGGAACCACGAGTTCTTCTGGGAGTCAATG 476
Query 390 AAACCCGGCGGTGGAGGAAAACCATCAGGAGAGCTTCTTGCTTTGCTTGAAAGAGATTTC 449
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAACCAGGTGGTGGAGGAAAACCATCAGGAGAGCTTCTTGCTTTGCTTGAAAGAGATTTC 536
Query 450 ACTTCTTATGAGAAGTTCTATGAAGAGTTCAACGCCGCTGCAGCCACTCAGTTTGGAGCT 509
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 537 ACTTCTTATGAGAAGTTCTATGAAGAGTTCAATGCTGCTGCAGCCACTCAGTTTGGAGCT 596
Query 510 GGCTGGGCCTGGCTCGCTTATGCAAATGACAAACTCAAAGTAGTGAAAACTCCAAATGCT 569
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 597 GGCTGGGCCTGGCTTGCTTATTCAAATGAAAAACTCAAAGTAGTGAAAACTCCCAATGCT 656
Query 570 GTGAATCCCCTTGTGCTCGGCTCTTTCCCCTTGCTTACCATTGATGTCTGGGAGCATGCT 629
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 GTGAATCCCCTTGTGCTCGGCTCTTTCCCATTGCTTACCATTGATGTCTGGGAGCATGCT 716
Query 630 TACTACCTTGACTTCCAGAACCGGAGACCGGATTACATAAAGACATTCATGACCAATCTT 689
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 717 TACTACCTTGACTTCCAGAACCGAAGACCAGATTACATAAAGACATTCATGACCAATCTT 776
Query 690 GTGTCTTGGGAAGCTGTGAGTGCCAGACTTGAGACCGCAAAGGCTGCTTCTTCCTCTTCT 749
||||||||||||||||| ||||||||||||||| |||| |||||||||||| | | |
Sbjct 777 GTGTCTTGGGAAGCTGTAAGTGCCAGACTTGAGGCCGCCAAGGCTGCTTCTGC-T-T--- 831
Query 750 TCTTAAGCAGAGTTCTCAACAATTTGACTTCAGTGA 785
||||| | |||| |||||||||||||||||||
Sbjct 832 ----AAGCAAATTTCTGAACAATTTGACTTCAGTGA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5