BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492328 Length=1127 Score E Sequences producing significant alignments: (Bits) Value AT4G25080.3 | Symbols: CHLM | magnesium-protoporphyrin IX methy... 1676 0.0 > AT4G25080.3 | Symbols: CHLM | magnesium-protoporphyrin IX methyltransferase | chr4:12876948-12878647 FORWARD LENGTH=1332 Length=1332 Score = 1676 bits (907), Expect = 0.0 Identities = 1057/1129 (94%), Gaps = 11/1129 (1%) Strand=Plus/Plus Query 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCACACTTTGTTTT-GCTTTCTCCTCTAC 59 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCTCACTTTGTTTTAGCTTTCTCCTCTAC 60 Query 60 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 120 Query 120 TCCCAGATTCCCCAACGCGACTAGGTTCAATGTAACTCCCCGGAGCAGAGCCGCCACCGT 179 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 121 TCCCAGATTCCCCAACGCGACTAGATTCAATGTAACTCCACGGAGCAGAGCCGCCACCGT 180 Query 180 CGTCGCGGCATCCGTCACCGACTTAGCCGGCGTAGACAGTACAACAATCGCCGTACTCGG 239 |||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||| Sbjct 181 CGTCGCGGCATCCGTCACCGACCTAGCCGGGGTCGACAGTACAACAATCGCCGTACTCGG 240 Query 240 TGGCGGATCCGTTGCAGCACTCGCGGCGATGGTTTCCTTGACGGATCCGGAGAGGAGGCG 299 ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 241 TGGAGGATCCGTAGCAGCACTCGCGGCGATGGTTTCCTTAACGGATCCGGAGAGGAGGCG 300 Query 300 GAAATTGCAGGCGGAGGAAGTTGGAGGAGGCGATAAGGAGGTGGTGAGGGAGTATTTCAA 359 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 301 GAAATTGCAGGCGGAGGAAGTTGGCGGAGGCGATAAGGAGGTTGTGAGGGAGTATTTCAA 360 Query 360 CAGTACCGGTTTCGAGAGGTGGAGGAAGATCTACGGCGATACTGATGAAGTGAATCGCGT 419 || || || |||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 361 TAGCACGGGGTTCGAGAGGTGGAGGAAGATCTACGGTGAGACTGATGAAGTGAATCGAGT 420 Query 420 ACAGAAGGATATTCGACTTGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTCAC 479 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 421 ACAGAAGGATATTCGACTCGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTGAC 480 Query 480 GGAAGATAGATCTTTGGCCGGCGTCACGGTCTGCGACGCCGGTTGCGGAACCGGTTTGCT 539 ||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 481 TGAAGATAGATCCTTGGCCGGTGTCACGGTTTGCGACGCCGGTTGTGGAACCGGTTTGCT 540 Query 540 CTCGATTCCACTTGCTAAGGAAGGAGCAATAGTCTCTGCTTCCGATATCTCTGCTGCTAT 599 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 541 CTCGATTCCACTTGCTAAGGAAGGAGCAATCGTCTCTGCTTCCGATATTTCTGCTGCTAT 600 Query 600 GGTTGCCGAAGCTGAGATGAAGGCAAAGGCACAACTGCCACCAGAGAATTTACCAAAATT 659 |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 601 GGTTGCTGAAGCTGAGATGAAGGCAAAGGCACAACTACCATCAGAGAATTTACCAAAATT 660 Query 660 TGAGGTGAATGATTTAGAGAGCCTAAGTGGGAAGTACGACACAGTGGTATGCCTCGACGT 719 ||||||||||||||| |||||||||| ||||||||| || || || ||||| |||||||| Sbjct 661 TGAGGTGAATGATTTGGAGAGCCTAACTGGGAAGTATGATACCGTTGTATGTCTCGACGT 720 Query 720 GCTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTCGCTTCTTTAGC 779 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 721 GTTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTTGCTTCTTTAGC 780 Query 780 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTACGATATCTTAAAGAG 839 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 781 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTATGATATCTTAAAGAG 840 Query 840 AATTGGAGAGCTTTTCCCAGGGCCATCAAAGGCTACACGGGCTTATCTACACTCGGAGGC 899 |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 841 AATTGGAGAGCTTTTCCCAGGGCCATCAAAAGCTACAAGGGCGTATCTACACTCGGAGGC 900 Query 900 AGATGTGGAAAGAGCGTTGCGTAAGGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 959 |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 901 GGATGTGGAAAGAGCGTTGGGTAAAGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 960 Query 960 CACACAGTTTTACTTCTCTAGGCTCATTGAAGCTGTTCCAATGTAGACCCATTTTAAAAC 1019 ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 961 CACACAGTTCTACTTCTCTAGGCTCATCGAAGCTGTTCCAATGTAGACCAATTTGAAAAC 1020 Query 1020 TAGATA-CATGTGAGGATGGTTAGCTTTCCTTTTGGGACTTTTGCAGTAGATCTCTCTCT 1078 |||| | || | | | |||||||||||| ||||| ||||||||||||||||||| Sbjct 1021 TAGAAATCAAATTTG-ACGGTTAGCTTTCCGTTTGGAACTTTTGCAGTAGATCTCT---- 1075 Query 1079 GTATAGCATATTAATTCGAAGAAGGATATTCGTTGAAGACATGCAGATT 1127 |||||||||||| ||| ||||||| ||||| ||||||||||||||| Sbjct 1076 GTATAGCATATTC---CGA-GAAGGATTTTCGTGGAAGACATGCAGATT 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55270800045 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5