BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492339
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24990.1 | Symbols: ATGP4 | Ubiquitin family protein | chr4:... 1251 0.0
> AT4G24990.1 | Symbols: ATGP4 | Ubiquitin family protein | chr4:12849709-12851633
REVERSE LENGTH=909
Length=909
Score = 1251 bits (677), Expect = 0.0
Identities = 849/924 (92%), Gaps = 43/924 (5%)
Strand=Plus/Plus
Query 1 AGAAGTGACGACGAAAAGAAA--TG----aaaaaa--aa--aaaaaa---aaaaCCGTCG 47
||||||||||||||||||||| | |||||| || |||||| ||||||||||
Sbjct 1 AGAAGTGACGACGAAAAGAAAGGGGAAAAAAAAAAGGAAGGAAAAAAGTGAAAACCGTCG 60
Query 48 GTTTGAGAAGGAACTTTGATATTTGGTGACtcttcttg-aaaaagctctttcttcttcct 106
| ||||||||||||||||||||||||||| | ||||| |||||| | | |||| ||
Sbjct 61 GCTTGAGAAGGAACTTTGATATTTGGTGA--C-TCTTGAAAAAAG--CAAGC-TCTTTCT 114
Query 107 tccttcttcttctttcgc-tttttcACACCTC-AAATCAAAGATCCG-AAGACGA--TC- 160
| |||| |||||||||| ||||||||||||| |||||||||||||| || |||| ||
Sbjct 115 T-CTTC--CTTCTTTCGCTTTTTTCACACCTCAAAATCAAAGATCCGAAACACGATTTCG 171
Query 161 CCGGAAGCTACGATTGTCTACtttttttttCAGATCTGAAATAGTTGTGTTTGAGAAGCG 220
||||||| ||| | ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 172 GAGGAAGCTTCGA-T-TCTAC--CTATTTTCAGATCTGAAATAGTTGTGTTTGAGAAGCG 227
Query 221 GGATTGGTGATCGGAGCTGGAATTTGG-TGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 279
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 228 GGATTGGTGATCGGAGCTGGAATTTGGTTGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 287
Query 280 TATGCCGGAGGAAGAGTCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 339
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TATGCCGGAGGAAGAATCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 347
Query 340 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGATTTTTTGAAGCAGAGGGTCGTCTCTGA 399
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 348 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGACTTTTTGAAGCAGAGGGTCGTCTCTGA 407
Query 400 TTGGCCCAAAGGCAAAACAGTTGTGCCAAAAGGGATAAATGAAGTGAAGCTGATAAGCTC 459
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 408 TTGGCCCAAAGGCAAAACAGTTGTTCCAAAGGGGATAAACGAAGTGAAGCTGATAAGCTC 467
Query 460 GGGTAAGATCTTGGAGAACAACAAGACTGTCGGGCAGTGTAAGACACCATTTGGAGAGAT 519
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 468 GGGTAAGATCTTGGAGAACAACAAGACTGTTGGGCAGTGTAAGACACCATTTGGAGATAT 527
Query 520 TGCTGGTGGAGTCATTGTCATGCATGTTGTTGTACAGCCATCTCTAGCTAAAACCAAAAC 579
|||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||
Sbjct 528 TGCTGGTGGAGTCATTGTGATGCATGTTGTTGTACAGCCTTCTCTAGCTAAATCCAAAAC 587
Query 580 AGAGAAGAAGGTTGATAAAGCACCAAAGGCGGTAATCTGCACATGCACCATTTTGTGAAG 639
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 588 AGAGAAGAAGGTTGATAAAGCACCAAAGGCAGTAATCTGCACATGCACCATTTTGTGAAG 647
Query 640 GGAGCAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCAGGTACAGAAGaaaa 699
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 648 GGAGGAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCCGGTACAGAAGAAAA 707
Query 700 caaaatcaaaaaa-gaaagctaaaagtaaagtaaagCTTCCCTTTAAGCTGTGGAGTTAT 758
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CAAAATCAAAAAAAGAAAGCTAAAAGTAAAGTAAAGCTTCCCTTTAAGCTGTGGAGTTAT 767
Query 759 ATTTATTATCTTTGAATGTGTAGAAATTGAACTA-AA-TTCTTTTCAAGTAACTCTTTGT 816
|| || ||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 768 -TT-ATCATCTTTGAATGTGTAGAAAATGAACTATAAATTCTTTTCAAGTAACTCTTTGT 825
Query 817 CCCTTCTTTGttttttttttCTTCTTACTTTCCGAATGTACGGAAGTTGTATAGGTTACT 876
||||| |||||||||| ||||||||||||| |||||| ||||| |||||||||||||
Sbjct 826 CCCTTATTTGTTTTTT----CTTCTTACTTTCCCAATGTATGGAAGCTGTATAGGTTACT 881
Query 877 AGGTCCATTACATTACGTGTGATG 900
||||||||||| ||||||||||||
Sbjct 882 AGGTCCATTACGTTACGTGTGATG 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5