BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492365
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa R... 1173 0.0
> AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa
RNA binding protein | chr4:12766030-12768040 REVERSE LENGTH=1271
Length=1271
Score = 1173 bits (635), Expect = 0.0
Identities = 736/785 (94%), Gaps = 6/785 (1%)
Strand=Plus/Plus
Query 400 GAAGGAGATGTGAGCGAAGGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTC 459
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GAAGGAGCTGTGAGCGAAAGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTC 547
Query 460 GTCGGAAATTTGGCTTATGATGTTGATAGCCAAGCCTTGGCTATGCTCTTTGAGCAAGCC 519
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 548 GTCGGAAATTTGGCTTATGATGTTAATAGCCAAGCTTTGGCTATGCTCTTTGAGCAAGCC 607
Query 520 GGTACTGTTGAAATCGCTGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTT 579
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GGTACTGTTGAAATCGCCGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTT 667
Query 580 GGATTTGTGACTATGAGTACCGTGGAAGAAGCTGAGACAGCTGTCGAGAAGTTCAACCGT 639
||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 668 GGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGT 727
Query 640 TATGATCTGAACGGACGTCTTCTGACGGTTAACAAGGCAGCTCCAAGAGGATCACGTCCA 699
|||||||| ||||||||||| || || || ||||||||||||||||||||||||||||||
Sbjct 728 TATGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCA 787
Query 700 GAACGTGCACCTCGGGTATATGAACCTGCATTCAGAGTCTATGTAGGGAATCTACCATGG 759
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 788 GAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATGTAGGGAATCTACCATGG 847
Query 760 GATGTGGACAATGGCCGTCTAGAACAGGTTTTCAGCGAGCATGGTAAAGTTGTGGAAGCT 819
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 848 GATGTGGACAATGGCCGTCTAGAACAGCTTTTCAGTGAGCATGGTAAAGTTGTGGAAGCT 907
Query 820 AGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTCGTCACAATGTCT 879
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 908 AGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTTGTCACAATGTCT 967
Query 880 AACGAGAATGAACTCAACGACGCCATCGCTGCTCTTGATGGACAGAACATGGAGGGTAGA 939
||| | ||||||||||||| |||||| |||| || |||||||||||| |||||||||||
Sbjct 968 GACGTGGATGAACTCAACGAAGCCATCTCTGCCCTCGATGGACAGAACTTGGAGGGTAGA 1027
Query 940 GCAATCAGAGTGAATGTAGCAGAGGAGCG--C-CCACGGCGTGGATTTTAAAGCTGAGAT 996
|||||||||||||||||||| || ||||| | ||| ||||||||| |||||||||||||
Sbjct 1028 GCAATCAGAGTGAATGTAGCGGAAGAGCGTCCTCCAAGGCGTGGATATTAAAGCTGAGAT 1087
Query 997 TTCTCTGTG-CC-CTCTCTCTCCCTCTCTTGCATTTTGTTTAGACGAGATTCTTACACTC 1054
| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 CTAGCTGTGCCCTCTCTCTCTCCCTATCTTGCATTTTGTTTAGACGAGATTCTTACACTC 1147
Query 1055 TTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTTCTTCTAAAGTAATA 1114
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1148 TTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTGCTTCTAAAGTAATT 1207
Query 1115 TGTATCGCTTCGCTTTTGATGATCTCTTATTCATAGTTAAAATCCTAATTGTTGGCGTTC 1174
|||||||||| | ||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1208 TGTATCGCTT-GTTTTTGATGATCTCTTATTCATAGTTTAATTCCTAATTGTTGGAGTTT 1266
Query 1175 CATTC 1179
|||||
Sbjct 1267 CATTC 1271
Score = 549 bits (297), Expect = 2e-155
Identities = 359/387 (93%), Gaps = 12/387 (3%)
Strand=Plus/Plus
Query 38 CTTCCACTTCTTCTATCTCTCACAATTCAGCAATGGCTTCTTCTATAGTTACCTCTAGCT 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CTTCCACTTCTTCTATCTCTCACAATTCAGCAATGGCTTCTTCTATAGTTACCTCTAGCT 116
Query 98 TGAAGCCTTTAGCCATGGCCGAttcttcctcttctaccattttctcccatccttccatct 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGAAGCCTTTAGCCATGGCCGATTCTTCCTCTTCTACCATTTTCTCCCATCCTTCCATCT 176
Query 158 cctcttccatctcttcctccaGAATTCGCTGCTCCAATGTTTCACTCCTCACGGGACACA 217
||||| ||||||||||||||||||||||| |||||| |||||| ||||| || |||| ||
Sbjct 177 CCTCTACCATCTCTTCCTCCAGAATTCGCAGCTCCAGTGTTTCCCTCCTTACCGGACGCA 236
Query 218 TTAACCTGCCCctctctttctctcgcttctctcgcttctctctatctctcAAATCCAAAA 277
|||||||||||||||||||||||||| | | |||||||||||| ||| ||||||
Sbjct 237 TTAACCTGCCCCTCTCTTTCTCTCGC-------G-T-CTCTCTATCTCTTAAAACCAAAA 287
Query 278 CCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAG 347
Query 338 AAGGTGGGGAAGGAAGCGTCGCCGTTGAGGAGAACGAGGACAGTTTCGAGTCACAAGATG 397
||||||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||||
Sbjct 348 AAGGTGGAGAAGGAAGCGTCGCTGTTGAGGAGACCGAGAACAGTTTAGAGTCACAAGATG 407
Query 398 -GTG--AAGGAGATGTGAGCGAAGGAG 421
| | ||||||||| |||||||||||
Sbjct 408 TGAGCGAAGGAGATGAGAGCGAAGGAG 434
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 ATCTCGCCCACCGTTCTAAAACCCTTCCCTTCCTCT 36
||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTCGCCCACCGTTCTAAAACCCTTCCCTTCCTCT 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5