BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492372 Length=499 Score E Sequences producing significant alignments: (Bits) Value AT4G24700.1 | Symbols: | unknown protein; Has 20 Blast hits to... 689 0.0 > AT4G24700.1 | Symbols: | unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12744622-12745313 REVERSE LENGTH=692 Length=692 Score = 689 bits (373), Expect = 0.0 Identities = 463/503 (92%), Gaps = 20/503 (4%) Strand=Plus/Plus Query 1 AAATggagacgaagaagaagagagatgaggaagaaacaagaggctaaagatg-aaa-g-g 57 ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| | Sbjct 52 AAATGGAGAAGAAGAAGAAGAGAGATGAGGAAGAAACGAGAGGCTAAAGATGAAAATGAA 111 Query 58 gaggaagaagaggagaagaaaaagagactagagttgatgaaggCAGCTGCACAGGCTTGG 117 || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 112 GAAGAAGAAGAGGAGAAGAAGAAGAGACTAGAGTTGATGAAGGCAGCTGCGCAGGCTTGG 171 Query 118 CTCAGCCACTCCCAAACCTCAAAACGTACCGTTTCAGAGTTCGAGGCGCAGAGAAAGCAT 177 ||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||| Sbjct 172 CTCAGCCACTCCCAAACCTCAAAACATACTGTTTTAGAGTTCGATGCGCAGAGAAAGCAT 231 Query 178 GCTTTTGTCAAAGGAAAGGCTTCACGTTTCAAAACGGAGGCCTTGTCCGCAAAGCATCAT 237 |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 232 GCTTTTGTCAAAGGGAAGGCATCACGTTTCAAAACGGAAGCCTTGTCCGCAAAGCATCAT 291 Query 238 CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG 351 Query 298 GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT 411 Query 358 AATG--G-CCTCAAGAAGAAGAAGAAGA-G-----TAGGGATAGCAGAAATAGCCTTAGG 408 |||| | ||||||||||| |||||||| | ||| || |||||||| ||||||||| Sbjct 412 AATGATGGCCTCAAGAAGATGAAGAAGAAGAAAACTAGAGACAGCAGAAACAGCCTTAGG 471 Query 409 AGTTTGTTTAATCGTTCGTCTTCAAAGAGATTCTAACAAACCCATGACGACGATGTTTTA 468 |||||||| | |||||||||||||||||||||||||||||| ||| | | |||| | Sbjct 472 AGTTTGTTCACTCGTTCGTCTTCAAAGAGATTCTAACAAACTCAT--C-A---TGTT--A 523 Query 469 CTACTTCAAACTTGTAAATTTTT 491 ||||||||||||||||||||||| Sbjct 524 CTACTTCAAACTTGTAAATTTTT 546 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23810985678 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5