BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492372

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24700.1 | Symbols:  | unknown protein; Has 20 Blast hits to...   689    0.0  


> AT4G24700.1 | Symbols:  | unknown protein; Has 20 Blast hits 
to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:12744622-12745313 REVERSE 
LENGTH=692
Length=692

 Score =  689 bits (373),  Expect = 0.0
 Identities = 463/503 (92%), Gaps = 20/503 (4%)
 Strand=Plus/Plus

Query  1    AAATggagacgaagaagaagagagatgaggaagaaacaagaggctaaagatg-aaa-g-g  57
            ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| |  
Sbjct  52   AAATGGAGAAGAAGAAGAAGAGAGATGAGGAAGAAACGAGAGGCTAAAGATGAAAATGAA  111

Query  58   gaggaagaagaggagaagaaaaagagactagagttgatgaaggCAGCTGCACAGGCTTGG  117
            || ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  112  GAAGAAGAAGAGGAGAAGAAGAAGAGACTAGAGTTGATGAAGGCAGCTGCGCAGGCTTGG  171

Query  118  CTCAGCCACTCCCAAACCTCAAAACGTACCGTTTCAGAGTTCGAGGCGCAGAGAAAGCAT  177
            ||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||||
Sbjct  172  CTCAGCCACTCCCAAACCTCAAAACATACTGTTTTAGAGTTCGATGCGCAGAGAAAGCAT  231

Query  178  GCTTTTGTCAAAGGAAAGGCTTCACGTTTCAAAACGGAGGCCTTGTCCGCAAAGCATCAT  237
            |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  232  GCTTTTGTCAAAGGGAAGGCATCACGTTTCAAAACGGAAGCCTTGTCCGCAAAGCATCAT  291

Query  238  CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG  297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  292  CCGTCGTTTTTGGATTGGGAATTCGGACAGTCGCTGTGGGATCCCTACGAGATTCTTTCG  351

Query  298  GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  GTCTCTAAGAAACTGGAACGCGAACTCACTTTAGAAGAACAAACCTTCTCTTCTTCAGAT  411

Query  358  AATG--G-CCTCAAGAAGAAGAAGAAGA-G-----TAGGGATAGCAGAAATAGCCTTAGG  408
            ||||  | ||||||||||| |||||||| |     ||| || |||||||| |||||||||
Sbjct  412  AATGATGGCCTCAAGAAGATGAAGAAGAAGAAAACTAGAGACAGCAGAAACAGCCTTAGG  471

Query  409  AGTTTGTTTAATCGTTCGTCTTCAAAGAGATTCTAACAAACCCATGACGACGATGTTTTA  468
            |||||||| | |||||||||||||||||||||||||||||| |||  | |   ||||  |
Sbjct  472  AGTTTGTTCACTCGTTCGTCTTCAAAGAGATTCTAACAAACTCAT--C-A---TGTT--A  523

Query  469  CTACTTCAAACTTGTAAATTTTT  491
            |||||||||||||||||||||||
Sbjct  524  CTACTTCAAACTTGTAAATTTTT  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23810985678


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5