BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492373 Length=2496 Score E Sequences producing significant alignments: (Bits) Value AT4G24690.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domai... 3526 0.0 > AT4G24690.1 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741033-12744533 FORWARD LENGTH=2604 Length=2604 Score = 3526 bits (1909), Expect = 0.0 Identities = 2313/2499 (93%), Gaps = 64/2499 (3%) Strand=Plus/Plus Query 1 GTTGTTTACGATAAAAGCGGATTACGGGTACGcttcttctaggataaatctttccccgat 60 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 4 GTTGTTTACGAGAAAAGCGGATTACGGGTACGCTTCTTCTAAGATAAATCTCTCCCCGAT 63 Query 61 tctctcttttttct-tct-tcttcttcttcttcgccaattagggtttcttcttctcgctt 118 |||||| ||||||| || | | |||| ||| ||||||||| | |||||||||||| Sbjct 64 TCTCTC-TTTTTCTCGCTAGATAC-TCTTTTTCTTCAATTAGGG--T-TTCTTCTCGCTT 118 Query 119 -ctcttttgattctctcCAGCTGATCTCATCCCCCTTTTGAGCGATGGAGTCTACTGCT- 176 | ||||| |||||||||||||||||| || | || || | ||||||||||||||||| Sbjct 119 GC-CTTTTAATTCTCTCCAGCTGATCTGAT-CTCC-GTT-ACCGATGGAGTCTACTGCTA 174 Query 177 ACTGCTCTCGTCGTCAAGGTGAGCTATGGAGGTGTGCTTAGGCGCTTCAGGGTGCCTGTT 236 || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 175 AC-GCACTCGTCGTCAAGGTGAGCTATGGAGGTGTGCTTAGGCGTTTCAGGGTGCCTGTT 233 Query 237 AAAGCCAATGGACAGCTTGATCTTGAAATGGCTGGTCTTAAGGAAAAGATCGCTGCTCTC 296 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 AAAGCTAATGGACAGCTTGATCTTGAAATGGCTGGTCTTAAGGAAAAGATCGCTGCTCTC 293 Query 297 TTTAA-C-CTCT-CGGATGCTGATTTGTCTCTGACTTACTCTGATGAGGATGGGGATGTG 353 ||||| | |||| |||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 294 TTTAACCTCTCTGCGGATGCTGAATTGAGTCTGACTTACTCTGATGAGGATGGGGATGTG 353 Query 354 GTTGCCCTTATTGATGACAACGATCTCTTTGATGTTACTAATCAGCGTCTTAAGTTCTTG 413 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 GTTGCCCTTGTTGATGACAACGATCTCTTTGATGTTACTAATCAGCGTCTTAAGTTCTTA 413 Query 414 AAGATCAATGTGCAGTTGAACTCTGGCAT-TCCCACAAACCCTATTACTCCAGAGAGTAG 472 |||||||| | | ||||| ||||| | | |||| ||| || | ||||||||||||| Sbjct 414 AAGATCAA--T---G-TGAACGCTGGCGTGT-CCACTAACTCTGCTGCTCCAGAGAGTAG 466 Query 473 TGGGAGTTCCACACCTGCTGGTATGCCTAACAGCCAAAACCCTGTTTCCAAAATCCAGAA 532 |||||||||||||||||| ||||||||| ||||| ||||||||||||||||| Sbjct 467 TGGGAGTTCCACACCTGCGGGTATGCCT---------AACCCGGTTTCCAAAATCCAGAA 517 Query 533 GGGTATAAATGATGTTCTGATGGCTGTACCTAACCCCATGCGTGATACCATATCGAAGGT 592 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 518 GGGTATAAATGATGTTCTGATGGCTGTACCTAACCCGATGCGTGATACCATATCAAAGGT 577 Query 593 GTACATGGACCTTGCATCAAAGG-CTACAACTTCTAGTCCTGTAGTTGGTGAGATGTTTG 651 |||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||| Sbjct 578 GTACATGGACCTTGCATCCAAGGCCT-CAACTTCTAGTCCTGTAGTTGGTGAGATGCTTG 636 Query 652 ATTGTATCTCCAAGCTAGGGCAACTCTCAGTTCCTCAGGACAGTAGTCCTTGCTCACCTG 711 |||| || |||||||||||||| |||||| |||||||||| ||||||||||||||||||| Sbjct 637 ATTGCATTTCCAAGCTAGGGCAGCTCTCAATTCCTCAGGAAAGTAGTCCTTGCTCACCTG 696 Query 712 TTACTAAGCCTGGTTCTTCAGGCCCTTCCCTGAGCAGGGATGTTCCTTCCGCTGCTGAAA 771 |||| ||||||||||||||||| |||||||||||||||||||||||||||||| || || Sbjct 697 TTACCAAGCCTGGTTCTTCAGGTGCTTCCCTGAGCAGGGATGTTCCTTCCGCTGGTGGAA 756 Query 772 AGAAGGATATCTCTGAGAGGACCCAGACCGGAAGGAAACCTGCTAATCTGAATGAACCCA 831 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 757 AGAAGGATATCTCTGAGAGGACCCAGACCGGAAGGAAACCTGTTAATCTGAATGAACCCA 816 Query 832 CTGGCTTTGCTGATTCTAAGACTTCTGGTCATGTACCAACCTCGTCTGGACTGGGTGCTA 891 ||||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 817 CTGGC---GCTCATTCAAAGACTTCTGGTCATGTACCAAACTCGTCTGGACTGGGTGCTA 873 Query 892 ATTTCAACGAGTGTCCCTTTAGTGGCAGTACCCTGAATTACTCCTGTCCAAATCCAGTTA 951 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 874 ATTTCAACGAGTGTCCCTTTAGTGGCAGTACCATGAATTACTCCTGTCCAAATCCAGTTA 933 Query 952 ACCTCAACAAGCATGGTCGTCGTGTATGTCATTCCAAAAAGAGCACCAATGGTGATTACT 1011 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 934 ACCTCAACAAGCATCCTCGTCGTGTTTGTCATTCCAAAAAGAGCACCAATGGTGATTACT 993 Query 1012 GGACTTCATTGGGTGTATTCCATAAGGGCATCCGTTGTGACGGATGTGGAGTTCTTCCAA 1071 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 994 GGACTTCATTGGGTGTATTCCATAAGGGCATCCGTTGTGACGGATGTGGAGTTCTTCCAA 1053 Query 1072 TTACTGGGCCTAGATTTAAGTCGAAAGTTAAAGAAGACTATGATCTTTGCACCATCTGCT 1131 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1054 TTACTGGGCCTAGATTTAAGTCGAAAGTTAAAGAAGACTATGATCTGTGCACCATCTGCT 1113 Query 1132 ATTCGGTGATGGGTAACGAGGGGGATTACACAAGGATGGATAAGCCTGTATCAGTTCAAC 1191 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1114 ATTCGGTGATGGGTAACGAGGGGGATTACACAAGAATGGATAAGCCTGTATCCGTTCAAC 1173 Query 1192 ATCTACATCCTTTTAGAGGACAGTTTATCCAATTTCCTAATCCTTGGTCGAGCCACCCTG 1251 |||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct 1174 ATCTGCATCCTTTTAGAGGACCGTTTACCCAATTTCCTAATCCTTGGTTGAGCCACCCTG 1233 Query 1252 TGCCGCGAGCAACCAATGGAGGTTCACCT-TCAAGGTGTACTCGGCCTAAACTAGACAGT 1310 |||| |||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||| Sbjct 1234 TGCCACGAGCAACCAATGGAGGTGCACCTCTCA-GGTGTACTCGCCCTAAACTAGACAGT 1292 Query 1311 CGCTTTGTCCTTGATGTGAACGTTGCTGATGGAACCGTTGTTGCTCCATCCGCCCCATTT 1370 || ||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1293 CGGTTTGTCCTTGATGTGAATGTAATTGATGGAACCGTTGTTGCTCCATCCGCCCCATTT 1352 Query 1371 ACTAAGATTTGGAAAATGAGGAACAGTGGTTCGCTGGTGTGGCCTCAGGGCACACAGATT 1430 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1353 ACTAAGATTTGGAAAATGAGGAACAGTGGTTCGCTGGTGTGGCCACAGGGCACACAGATT 1412 Query 1431 GTCTGGATCGGTGGGGACAGGTTCTGCAACTCATTGTCAGTTGATTTACAGATTCCAAAG 1490 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1413 GTCTGGATCGGTGGGGACAGGTTCTGCAACTCCTTGTCAGTTGATTTACAGATTCCAAAG 1472 Query 1491 GAGGGTGTGCCTATCTATAGTGAGCTTGATGTCAAAGTTGATTTTGTTGCACCAGAGTTA 1550 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1473 GAGGGTGTGCCTATCTATAGTGAACTTGACGTCAAAGTTGATTTTGTTGCACCAGAGTTA 1532 Query 1551 CCTGGTCGATACATTTCTTATTGGAGGATGGCTTCCTCTGACGGTGCTAAGTTTGGGCAA 1610 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1533 CCTGGTCGATACATTTCTTATTGGAGGATGGCTACCTCTGACGGTGCTAAGTTTGGGCAA 1592 Query 1611 CGTGTTTGGGTGTTGATACATGTTGATGCATCCCTCAAGAATTCTATTGTGAATGAGCTC 1670 |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| | Sbjct 1593 CGTGTTTGGGTGTTGATACATGTTGATGCATCTCTGAAGAATTCTGTTGTGAATGAGTTT 1652 Query 1671 CACGGACTCAACCTGAATGCCTCCCCCTCCCTTGATGAGAATTTTTCAAGTGAATTTCCA 1730 || ||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||| | Sbjct 1653 CATGGACTGAACCTTAATGCCTCCCCCTCCCTTGATGAGAATTTTCCAAGCGAATTTCTA 1712 Query 1731 GGGATTATTAATTATGAGTCAGCTCAACCTGGCAGCTCCAATGTCAATCCTGGTACAGTG 1790 |||||||| ||||||||||||||||||||||||||||||| |||||||||||| || ||| Sbjct 1713 GGGATTATGAATTATGAGTCAGCTCAACCTGGCAGCTCCAGTGTCAATCCTGGGACCGTG 1772 Query 1791 AAAGGTGCTGATCTAGAGGGAGAAGAAGTTGGTGAATCGCAGGTCC-TGGAGAAAGAAAA 1849 |||||| ||||||||||||| |||| |||||||| | |||| || |||| |||||||| Sbjct 1773 AAAGGTACTGATCTAGAGGGCGAAG---TTGGTGAAACACAGG-CCGTGGAAAAAGAAAA 1828 Query 1850 CACGTT-GATTGGTGAAGTTCGTCTTGCTATCCCTCA-GAGTCATTCTCCTTCATCTTCA 1907 | | || | ||||||||| || || |||||||||||| | |||||||||||||||||||| Sbjct 1829 C-CTTTTGGTTGGTGAAGCTCATCCTGCTATCCCTCACG-GTCATTCTCCTTCATCTTCA 1886 Query 1908 TCTTCGTCATTTAACATGGTCGAGTTCCCAAGTATGCCTGCTGTTGAGGTCGTGTCTGGT 1967 ||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct 1887 TCTTCTTCATTTAACATGGTCGACTTCCCAAGCATGCCTGCTGTTGAGGTCTTGTCTGGT 1946 Query 1968 GGTTCTTCATCTAC-A-AAA-GACGTCCCAGTTCCTCTTCAAGAGGATTTAGAGAAGAAT 2024 |||||||||||||| | ||| ||||| |||||||||||||| |||||| |||| |||||| Sbjct 1947 GGTTCTTCATCTACTACAAAAGACGTGCCAGTTCCTCTTCAGGAGGATATAGAAAAGAAT 2006 Query 2025 GACGTTGAGATAACCATGCTCAAGGAGCTCGAGGAAATGGGTTTCAAGGAGATAGATTTG 2084 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2007 GACGTGGAGATAACCATGCTCAAGGAGCTCGAGGAAATGGGTTTCAAGGAGATAGATTTG 2066 Query 2085 AACAAGGAGATCTTGAGGGATAACGAGTACAACTTGGAGCAGTCCGTTGATGCTCTTTGT 2144 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 2067 AACAAGGAGATCTTGAGGGATAACGAGTACAACCTGGAGCAGTCTGTTGATGCTCTTTGT 2126 Query 2145 GGAGTTAGCGAGTGGGATCCTATCCTAGAGGAGCTTCAGGAAATGGGCTTCTGTGATGAT 2204 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 2127 GGAGTTAGCGAGTGGGATCCAATCCTAGAGGAGCTTCAGGAGATGGGCTTCTGTGATGAT 2186 Query 2205 GTGACGAACAAGAGGCTGCTGAAGAAGAACAATGGAAGCATCAAAGGCGTGGTAATGGAT 2264 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2187 GTGACGAACAAGAGACTGCTGAAGAAGAACAATGGAAGCATCAAAGGCGTGGTAATGGAT 2246 Query 2265 CTCCTCACAGGGGAGAAGGAGGCTTAATGAGCT-TTTGGATTCTGGCTACTCTTCTCTAT 2323 ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||| Sbjct 2247 CTCCTCACAGGGGAGAAGGAGGCTTGATGAGCTCTTTGGTTTCTGGCAACTCTTCTCTAT 2306 Query 2324 CTATCTTATC-A---GGAATAATTATGTTTTTATAAATAAAACCTGATCTCT-AGTTTGA 2378 || ||||||| | |||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2307 CTCTCTTATCTATCAGGAATAATTATGTTTT-ATAAATAAAACCTGATCTCTTAGTTTGG 2365 Query 2379 TTTCGTGCTGCGTCACATGGGTGTGTTCCTTTGCTTTGTGTTGG-ATGATGTTACTAT-T 2436 |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| | Sbjct 2366 TTTCGTGCTGCGTCACATGG-TCTGTTCCTTTGCTTTGTGTTGGGATGATGTTACTATGT 2424 Query 2437 TAAAATTTATCTAAGACGTGGATGGTTTCTTTCTTATTT 2475 ||| | |||||||||| ||||||||||||||||||||| Sbjct 2425 TAAC-TCTATCTAAGACATGGATGGTTTCTTTCTTATTT 2462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 123862182267 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5