BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492376 Length=907 Score E Sequences producing significant alignments: (Bits) Value AT4G24660.1 | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox pro... 1253 0.0 > AT4G24660.1 | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein 22 | chr4:12724743-12725637 REVERSE LENGTH=895 Length=895 Score = 1253 bits (678), Expect = 0.0 Identities = 844/918 (92%), Gaps = 35/918 (4%) Strand=Plus/Plus Query 1 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATAATAGTTTTTTAAGTAACAATCTAA 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATTATAGTTTTTTAAGTAACAATCTAA 61 Query 61 -T-T-GTACGGATGTCTCTTGAGATGTTGAAGAATTAAG-AATAAAGAAAGA--G---GG 111 | | ||||||||||||||||||||||| |||||||||| |||||||||||| | || Sbjct 62 TTGTAGTACGGATGTCTCTTGAGATGTTCAAGAATTAAGAAATAAAGAAAGAGGGATCGG 121 Query 112 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCGGC 171 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 122 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCTGC 181 Query 172 GGTTACGACTCTCTGAGCGGCGAGGGAGCCACGTCTAGCGGCGGCGGTGGAGGAGGAGGA 231 |||||||||||||| ||||| ||||||||||| |||| | || |||||||||| |||| Sbjct 182 GGTTACGACTCTCTAAGCGGTGAGGGAGCCACATCTA---GTGGTGGTGGAGGAGTAGGA 238 Query 232 AGGAATAAAGGAGTTGGAGGGAAGTTGAGGTATAGAGAGTGCTTGAAGAATCATGCTGTT 291 |||| |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||| Sbjct 239 AGGAGTAAAGGAGTTGGAGCGAAGATAAGGTATAGAGAGTGCTTGAAGAACCATGCTGTT 298 Query 292 AACATCGGCGGCCACGCCGTGGACGGTTGCTGTGAGTTCATGCCTTCCGGTGAAGATGGT 351 ||||| || |||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 299 AACATAGGTGGCCACGCCGTGGACGGTTGTTGCGAGTTTATGCCTTCCGGTGAAGATGGA 358 Query 352 ACGCTCGACGCTCTCAAGTGTGCAGCTTGTGGCTGCCACCGCAACTTCCACCGCAAGGAA 411 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 359 ACGCTCGACGCTCTTAAGTGTGCAGCTTGCGGCTGCCACCGCAACTTCCACCGCAAGGAA 418 Query 412 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 478 Query 472 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCCACGGCTACAGGGCAGCCTATA 531 ||||||||||||||||||||||||||||||||||||||| | | || | |||| || Sbjct 479 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCC--G-C----GG-C-GCCT-TA 528 Query 532 -AGGCCGCCCGTGGCGTCCGCGGACGAGGAGGATACATCGAATCCGAGCAGCAGCGGCGG 590 ||||| |||| ||| || | |||||||||||||||||| ||||| |||||||||||||| Sbjct 529 CAGGCCACCCGCGGCATCGGGGGACGAGGAGGATACATCAAATCCTAGCAGCAGCGGCGG 588 Query 591 GACCACCGCAAAGAGGTTTAGAACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGTTAGC 650 |||||| | || |||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 589 GACCAC-G-AA-GAGGTTTAGAACGAAGTTCACGGCGGAACAGAAAGAGAAGATGTTAGC 645 Query 651 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 646 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 705 Query 711 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 765 Query 771 TTCTCTTGGTAAGAAACCCTAATTTTACTCAAGATATGATTTAAAACACTAGAGGATCAT 830 ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| Sbjct 766 CTCTCTTGGTAAGAAACCCTAATTTTGCTCGAGACATGATTTAAAACACTAGAGGATCAT 825 Query 831 AATTGGCAAGAAATTTCTTTTTT-GGTATGACTCTTCTGTAACTACTTCTGCTTATCAGT 889 ||||| |||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 826 AATTG--------TTTCTTTTTTTGGTATGACTCTTCTGTAACTACTTCTGCTTATTAGT 877 Query 890 TGTGTTCTTTTTTCCTGG 907 | |||| ||||||||||| Sbjct 878 TATGTTATTTTTTCCTGG 895 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44306517654 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5