BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492400
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance trans... 1978 0.0
> AT4G24460.1 | Symbols: CLT2 | CRT (chloroquine-resistance transporter)-like
transporter 2 | chr4:12642887-12645447 FORWARD
LENGTH=1434
Length=1434
Score = 1978 bits (1071), Expect = 0.0
Identities = 1235/1311 (94%), Gaps = 23/1311 (2%)
Strand=Plus/Plus
Query 1 ATGGATACCGTTCTCATGGCTACAACACAACCAATCAGATGTCTTCATGCTTCGATTCCT 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 2 ATGGATACCGTTCTCATGGCTACAACACCACCAATCAGATGTCTTCATGCTTCAATTCCT 61
Query 61 ACGGT-ATCTCGTTCGCCGGCGATTTATCAGGTCAGCTACCGTAGCT-CAAGACTCTTGT 118
||||| || |||||||||||||||||||||||||||| ||| |||| | | ||| || |
Sbjct 62 ACGGTGTTC-CGTTCGCCGGCGATTTATCAGGTCAGCTGCCGGAGCTCCCA-ACTGTTTT 119
Query 119 CCTACCGATCGACGAC--T-ATGAGC-TCGTGTTTTCTCAGACGGTCCGATTTGAGATCT 174
||||||| |||||||| | |||||| | |||||||||||||||||||||||||||||||
Sbjct 120 CCTACCGTTCGACGACTATGATGAGCAT-GTGTTTTCTCAGACGGTCCGATTTGAGATCT 178
Query 175 CG-TTTCCTTAGTACT---------ACTTTTCCGATGAGAC-A--TGGCTTTTCCGTCAA 221
|| ||| ||||||||| |||| ||||||||||| | | |||||||||||
Sbjct 179 CGCTTT-CTTAGTACTCCGAAAACCACTTCTCCGATGAGACGACCTCGCTTTTCCGTCGG 237
Query 222 TGCTTCGACGGAGCAGTCTACAATTCCTTCTAATCGGAACCATATTGTGGTTAACTCCGT 281
|||||| |||||| ||||| ||||||||||||||||||||| ||| |||| |||||||||
Sbjct 238 TGCTTCTACGGAGGAGTCTTCAATTCCTTCTAATCGGAACCTTATCGTGGCTAACTCCGT 297
Query 282 CGTCATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCCTTGGTTCCCAT 341
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 CGTAATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCTTTGGTTCCCAT 357
Query 342 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 417
Query 402 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACAAATGAAATGATGGCTGTACC 461
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 418 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACGAATGAAATGATGGATGTACC 477
Query 462 CAAATGGAGATTCGCAATCATTGGTTTTCTTGAAGCTATTGGAGTTGCCACTGGCATGGC 521
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 478 CAAATGGAGATTCGCAATCATTGGTTTTCTCGAAGCTCTTGGTGTTGCCACTGGCATGGC 537
Query 522 TGCAGCAGCCATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACGTTTTTGGTGTG 581
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 538 TGCAGCAGCAATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACATATTTGGTGTG 597
Query 582 GCAGCTGCTTTTTGCTCTTCTTATTTTGGGCAGGAGCTTTTTGCTTAACCAAATTGCTGG 641
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 598 GCAGCTGCTTTTTGCTCTTCTTATTTTAGGCAGGAGGTTTTTGCTTAACCAAATTGCTGG 657
Query 642 TTGTTTTCTTGTGGCTGTGGGCGTTGTGGTGTCTGTTTCAAGTGGATCTGGTGCAGATAC 701
|||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 658 TTGTCTCCTTGTGGCTGTGGGGGTTGTGGTGGCTGTTTCAAGTGGATCTGGTGCAGATAC 717
Query 702 TACGCTATCTGGTATTGGTTTCTTATGGCCTGCTGTATTGGTAGCATCTGCTGCTTTTCA 761
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 TACGCTATCTGGAATCGGTTTCTTATGGCCTGCTGTATTGGTAGCATCCGCTGCTTTTCA 777
Query 762 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 837
Query 822 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTCGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTTGT 897
Query 882 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 957
Query 942 GTATCTAAAAGATGGTGCCGGCTGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1001
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 ATATCTAAAAGATGGTGCCGGATGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1017
Query 1002 TGGTGCCCCTATACTCCCACTACTCTATATAGCCACCAATCTCGCTTTCAACATCTCATT 1061
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TGGTGCCCCTATACTCCCACTGCTCTATATATCCACCAATCTCGCTTTCAACATCTCATT 1077
Query 1062 GCTTCATCTGGTGAAAATATCTTCGGCAATCGTTTCCTCTCTCGCTGTGATGCTCTCAGT 1121
||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 1078 GCTCCATCTGGTGAAAATATCTTCAGCAATCGTTTCCTCTCTTACCATGATGCTCTCAGT 1137
Query 1122 GCCATTATCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCCATTAGCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1197
Query 1182 GAGCTCAAATTTCACGATGGGGTGTATAGTTCTGGTCCTAGGTCTTCTTCTCTACAACAT 1241
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 GAGCTCAAATTTTACGATGGGGTGTATAGTTCTTGTCCTAGGTCTTCTTCTCTACAACAT 1257
Query 1242 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCTCTC 1292
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCACTC 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5