BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492450 Length=728 Score E Sequences producing significant alignments: (Bits) Value AT4G24130.1 | Symbols: | Protein of unknown function, DUF538 |... 1033 0.0 > AT4G24130.1 | Symbols: | Protein of unknown function, DUF538 | chr4:12527753-12528593 FORWARD LENGTH=752 Length=752 Score = 1033 bits (559), Expect = 0.0 Identities = 685/741 (92%), Gaps = 28/741 (4%) Strand=Plus/Plus Query 1 ATTATCTTCCAAAATTTTCACCAC-AAACATTATATAAATTCCTCTTCATATTTGAAGAA 59 ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct 1 ATTATCTTCCAAAATCCTCACCACAAAACATTATATAATTTCCTCTTCATATTTCAAGAA 60 Query 60 AACATTAATC---TTTTCT-TGTAGAATTCTATAATTCTCGTAACTAAATGGCGAGCGAG 115 ||| |||||| |||| | |||||||||||||| |||| |||||||||||||||||||| Sbjct 61 AACTTTAATCTTTTTTTGTGTGTAGAATTCTATATTTCTGGTAACTAAATGGCGAGCGAG 120 Query 116 GGAGTCGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGAGCGGAAGAA 175 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 121 GGAGTTGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGGGCGGAGGAA 180 Query 176 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT 240 Query 236 TTGAAGAATCTTGTGGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 295 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGAAGAATCTTGTTGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA 300 Query 296 GACACTCCTTACGAGCATTTCTTCGAAGCAACCAACACTCGTGTCTCCTACGGTCTCGAG 355 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 GACACTCCTTACGAGCATTTCTTCGAAGCCACCAACACTCGTGTCTCCTACGGTCTCGAA 360 Query 356 GTCACCGCCTATGTCGAAAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 415 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTCACCGCCTATGTCGACAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG 420 Query 416 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT 480 Query 476 TACTTCAAGACTCCTATGGGAATCGGCAAGTCTTTCCCCGTTACCGCATTCATGGACGAG 535 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 481 TACTTCAAGACTCCTATGGGAATCGGCAGGTCTTTCCCCGTTACCGGATTCATGGACGAG 540 Query 536 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAATTAAACCatttaataattattc 595 |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 541 GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAACTAAACCAACTAATAATTATTC 600 Query 596 ttatgataattataattacattttg-ggatgcttttataatttttattttaatatCTTGT 654 ||||||| | || | |||||||| || ||||||| || |||| |||| ||||| Sbjct 601 TTATGAT--T-AT--T-ACATTTTGTGG-TGCTTTTTTA-TTTT-ATTT------CTTGT 645 Query 655 AAGGTTGCTCTCTGCCATTA--T-CAAT-AA-AA--CATTTTCTGGGAGCGTTGATTATT 707 ||||||||||| ||| |||| | | || || || ||||||||||||| |||||||||| Sbjct 646 AAGGTTGCTCTATGCTATTAAATTCTATCAATAATACATTTTCTGGGAGTGTTGATTATT 705 Query 708 TTCCCTAAAAACGTTATTCAT 728 || |||| |||| |||||||| Sbjct 706 TTTCCTACAAACTTTATTCAT 726 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35314605341 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5