BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492450

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24130.1 | Symbols:  | Protein of unknown function, DUF538 |...  1033    0.0  


> AT4G24130.1 | Symbols:  | Protein of unknown function, DUF538 
| chr4:12527753-12528593 FORWARD LENGTH=752
Length=752

 Score = 1033 bits (559),  Expect = 0.0
 Identities = 685/741 (92%), Gaps = 28/741 (4%)
 Strand=Plus/Plus

Query  1    ATTATCTTCCAAAATTTTCACCAC-AAACATTATATAAATTCCTCTTCATATTTGAAGAA  59
            |||||||||||||||  ||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct  1    ATTATCTTCCAAAATCCTCACCACAAAACATTATATAATTTCCTCTTCATATTTCAAGAA  60

Query  60   AACATTAATC---TTTTCT-TGTAGAATTCTATAATTCTCGTAACTAAATGGCGAGCGAG  115
            ||| ||||||   |||| | |||||||||||||| |||| ||||||||||||||||||||
Sbjct  61   AACTTTAATCTTTTTTTGTGTGTAGAATTCTATATTTCTGGTAACTAAATGGCGAGCGAG  120

Query  116  GGAGTCGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGAGCGGAAGAA  175
            ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  121  GGAGTTGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGGGCGGAGGAA  180

Query  176  TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCT  240

Query  236  TTGAAGAATCTTGTGGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA  295
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTGAAGAATCTTGTTGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAA  300

Query  296  GACACTCCTTACGAGCATTTCTTCGAAGCAACCAACACTCGTGTCTCCTACGGTCTCGAG  355
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  301  GACACTCCTTACGAGCATTTCTTCGAAGCCACCAACACTCGTGTCTCCTACGGTCTCGAA  360

Query  356  GTCACCGCCTATGTCGAAAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG  415
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GTCACCGCCTATGTCGACAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAG  420

Query  416  ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT  475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  ATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATT  480

Query  476  TACTTCAAGACTCCTATGGGAATCGGCAAGTCTTTCCCCGTTACCGCATTCATGGACGAG  535
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  481  TACTTCAAGACTCCTATGGGAATCGGCAGGTCTTTCCCCGTTACCGGATTCATGGACGAG  540

Query  536  GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAATTAAACCatttaataattattc  595
            |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct  541  GAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAACTAAACCAACTAATAATTATTC  600

Query  596  ttatgataattataattacattttg-ggatgcttttataatttttattttaatatCTTGT  654
            |||||||  | ||  | |||||||| || ||||||| || |||| ||||      |||||
Sbjct  601  TTATGAT--T-AT--T-ACATTTTGTGG-TGCTTTTTTA-TTTT-ATTT------CTTGT  645

Query  655  AAGGTTGCTCTCTGCCATTA--T-CAAT-AA-AA--CATTTTCTGGGAGCGTTGATTATT  707
            ||||||||||| ||| ||||  | | || || ||  ||||||||||||| ||||||||||
Sbjct  646  AAGGTTGCTCTATGCTATTAAATTCTATCAATAATACATTTTCTGGGAGTGTTGATTATT  705

Query  708  TTCCCTAAAAACGTTATTCAT  728
            || |||| |||| ||||||||
Sbjct  706  TTTCCTACAAACTTTATTCAT  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35314605341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5