BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492451
Length=2411
Score E
Sequences producing significant alignments: (Bits) Value
AT4G24120.1 | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 | ch... 3688 0.0
> AT4G24120.1 | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 |
chr4:12524491-12527341 FORWARD LENGTH=2430
Length=2430
Score = 3688 bits (1997), Expect = 0.0
Identities = 2289/2425 (94%), Gaps = 39/2425 (2%)
Strand=Plus/Plus
Query 1 AAAGCAAAGTTTCATATTCCTAAAAATTCAGGTATTTATAAGTATCAAAGATAAATTCAG 60
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 27 AAAGCAAAGTTTCATATTCCTAAAAATTCTGGT-TTTATAAGTATCAAAGACAAATTCAG 85
Query 61 TTTCCATGGAAATAGAGCAGCCAAAGATCATgaagagagaaggagaagaagaagaagaCA 120
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 86 TCTCCATGGAAATAGAGCAAAGAAGGATCATGAAGAGAGAAGGAGAAGAAGAAGAAGACA 145
Query 121 ACAATCACCTGTCACTGCAGGAAGAA-ACACCAGAAACAGAGGAAGAGATGTCTGGGAGG 179
||||||| || |||||||| |||||| | |||||| ||||||||||||||||||||||||
Sbjct 146 ACAATCAACTTTCACTGCAAGAAGAAGA-ACCAGATACAGAGGAAGAGATGTCTGGGAGG 204
Query 180 ACAATCGAACCATGGACGAAGCAGATAACGGTGAGAGGAGTGTTAGTGAGCATAGTGATC 239
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 205 ACAATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTCGTGAGCATAGTGATC 264
Query 240 GGAGTTGTGTTCAGTGTGATAGCTCAGAAGCTAAATCTCACGACAGGGATTGTTCCAAAT 299
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 265 GGAGTTGTGTTCAGTGTGATTGCTCAGAAGCTAAATCTCACGACAGGAATTGTTCCAAAT 324
Query 300 CTCAACAGCTCTGCAGCTTTACTGGCTTTTGTCTTTGTCCAGACTTGGACTAAGATTCTC 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 325 CTCAACAGCTCTGCAGCTTTACTTGCTTTTGTCTTTGTCCAGACTTGGACTAAGATTCTC 384
Query 360 AAGAAATCAGGATTTGTCGC-AAAGCCATTCACAAGACAAGAGAACACAATGATTCAGAC 418
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 385 AAGAAATCAGGATTTGTTGCGAAA-CCATTCACAAGACAAGAGAACACAATGATTCAGAC 443
Query 419 ATCTGCTGTTGCTTGTTACGGCATTGCGGTTGGAGGTGGGTTTGCTTCCTATCTTCTGGG 478
|||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct 444 ATCTGCTGTTGCTTGTTACGGCATCGCTGTCGGAGGTGGGTTTGCTTCATATCTTCTGGG 503
Query 479 GTTAAACCATAAGACATATGTGTTGTCTGGTGTGAACTTGGAAGGTAACTCTCCAAAGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 GTTAAACCATAAGACATATGTGTTGTCTGGTGTGAACTTGGAAGGTAACTCTCCAAAGAG 563
Query 539 TGTGAAAGAACCTGGCCTTGGTTGGATGACTGCTTATCTCTTTGTTGTCTGTTTCATCGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGTGAAAGAACCTGGCCTTGGTTGGATGACTGCTTATCTCTTTGTTGTCTGTTTCATCGG 623
Query 599 TCTTTTTGTTCTAATCCCTCTCCGAAAGGTTATGATTGTTGACCTTAAATTAACATATCC 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TCTTTTTGTCCTAATCCCTCTCCGAAAGGTTATGATTGTTGACCTTAAATTAACATATCC 683
Query 659 GAGTGGTTTAGCTACTGCGGTTCTCATCAATGGCTTCCACACACAAGGAGATGCTCAAGC 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 684 GAGTGGTTTAGCTACTGCGGTTCTCATCAATGGCTTCCACACACAAGGAGATGCACAGGC 743
Query 719 CAAGAAACAAGTGCGTGGTTTCATGAAATACTTCTCATTTAGTTTCTTGTGGGGTTTCTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CAAGAAACAAGTGCGTGGTTTCATGAAATACTTCTCATTTAGTTTCTTGTGGGGTTTCTT 803
Query 779 CCAGTGGTTTTTCTCTGGTATTGAAGATTGTGGCTTTGCTCAATTCCCAACCTTTGGCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 804 CCAGTGGTTTTTCTCTGGTATTGAAGATTGTGGCTTTGCTCAATTCCCAACCTTTGGTTT 863
Query 839 GAAAGCTTGGAAACAAACGTT-TTACTTTGATTTCAGCATGACATTTGTAGGAGCAGGAA 897
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 864 GAAAGCTTGGAAACAAACGTTCTT-CTTTGATTTCAGCATGACATTTGTGGGAGCAGGAA 922
Query 898 TGATCTGTTCACATTTGGTTAACCTTTCTTTGCTTTTAGGAGCTATACTCTCTTATGGCT 957
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 923 TGATTTGTTCACATTTGGTTAACCTTTCTTTGCTTTTAGGAGCTATCCTCTCTTATGGCT 982
Query 958 TAATGTGGCCTCTTCTTGATAAACTCAAAGGCTCTTGGTTCCCTGAGAATCTCGACGAAC 1017
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 983 TAATGTGGCCTCTTCTTGATAAACTTAAGGGCTCTTGGTTCCCTGATAATCTCGACGAAC 1042
Query 1018 ACAACATGAAGAGCATATACGGTTACAAAGTCTTCTTATCCGTAGCTCTAATCCTCGGCG 1077
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1043 ACAACATGAAGAGCATTTACGGCTACAAAGTCTTCTTATCCGTAGCTCTAATCCTCGGCG 1102
Query 1078 ACGGTCTTTATACTTTCATTAAGATCATCTTTGTGACCATTGTCAATGTCAACGCAAGAT 1137
|||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1103 ACGGTCTTTACACTTTCGTTAAGATCCTCTTTGTGACCATTGCCAATGTCAACGCAAGAT 1162
Query 1138 TGAAGAACAAACCTAATGATCTAGATGACGTGGGTCACAAGAAACAGCGGAAAGATCTCA 1197
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1163 TGAAGAACAAACCTAATGATCTAGATGACGTAGGTCACAAGAAACAACGGAAAGATCTCA 1222
Query 1198 TGGAAGATGAGAATTTCCTCAGAGATAAAATCCCGATGTGGTTCGCAGTTGCCGGATATC 1257
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1223 AGGAAGATGAGAATTTCCTCAGAGATAAAATCCCAATGTGGTTCGCAGTTTCCGGATATC 1282
Query 1258 TTACATTCGCTGCGGTCTCAACCGTCGTGATTCCTCTGATATTTCCTCAGCTAAAATGGT 1317
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1283 TTACATTCGCTGCGGTCTCAACCGTCGTGGTTCCTCTGATATTTCCTCAGCTCAAATGGT 1342
Query 1318 ATTACGTTATTGTAGCTTACATTTTCGCGCCTTCTCTCGCCTTCTGTAACGCTTATGGAG 1377
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1343 ATTACGTTATTGTAGCTTACATTTTCGCGCCTTCTCTGGCCTTCTGTAACGCTTATGGAG 1402
Query 1378 CTGGACTTACCGACATTAACATGGCTTATAACTACGGCAAAATCGGTCTTTTCGTTATCG 1437
|||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1403 CTGGACTTACAGACATTAACATGGCTTATAACTACGGCAAAATTGGTCTTTTTGTCATCG 1462
Query 1438 CTGCTGTGACGGGAAGAGAGAACGGAGTTGTAGCCGGACTGGCCGGTTGTGGACTGATCA 1497
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1463 CGGCTGTGACGGGAAGAGAGAACGGAGTTGTAGCCGGACTCGCCGGTTGTGGACTGATCA 1522
Query 1498 AATCAGTTGTTTCGGTTTCTTGTATTTTGATGCAAGATTTCAAGACGGCTCATTACACGA 1557
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 AATCCGTTGTTTCGGTTTCTTGTATTTTGATGCAAGATTTCAAGACGGCTCATTACACGA 1582
Query 1558 TGACGTCACCTAAGGCTATGTTTGCTAGCCAAATGATTGGAACGGTTGTTGGATGCATCG 1617
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1583 TGACGTCACCTAAGGCTATGTTTGCTAGCCAAATGATTGGAACGGTCGTTGGATGCATCG 1642
Query 1618 TGACGCCGTTAAGTTTCTTCTTGTTCTACAAAGCGTTCGACGTTGGAAACCCTAACGGAG 1677
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1643 TGACGCCGTTAAGTTTCTTTTTGTTCTACAAAGCGTTCGACATTGGAAACCCTAACGGAG 1702
Query 1678 AATTCAAGGCTCCTTACGCTTTGATTTACAGAAACATGGCGATTCTTGGGGTGCAAGGCT 1737
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1703 AATTCAAGGCTCCTTACGCTTTGATTTACAGAAATATGGCGATTCTTGGGGTGCAAGGCT 1762
Query 1738 TCTCTGCTCTGCCTCTTCACTGTCTCCAAATGTGTTACGCGTTTTTCGGCTTTGCTGTTT 1797
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1763 TCTCTGCTCTGCCTCTTCACTGTCTCCAAATGTGTTACGGGTTTTTCGGGTTTGCTGTTT 1822
Query 1798 TGGTCAATGTCGTCAGGGATCTTACCCCGGCGAAGGTTGGGAGGTTCATGCCGCTTCCGA 1857
||||||| |||||||| |||||||| ||||||||| |||| || |||||||| |||||||
Sbjct 1823 TGGTCAACGTCGTCAGAGATCTTACTCCGGCGAAGATTGGAAGATTCATGCCACTTCCGA 1882
Query 1858 CGGCTATGGCTGTTCCGTTTCTTGTCGGAGCTTATTTCGCGATTGACATGTGTGTTGGGA 1917
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1883 CGGCGATGGCTGTTCCGTTTCTTGTCGGAGCTTATTTCGCAATCGACATGTGTGTTGGGA 1942
Query 1918 CTTTGATAGTGTTTGTTTGGGAGAAGATGAATCGGAAGAAAGCAGAGTTTATGGTTCCGG 1977
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 CTTTGATTGTGTTTGTTTGGGAGAAGATGAATCGGAAGAAAGCAGAGTTTATGGTTCCGG 2002
Query 1978 CAGTGGCTTCAGGGCTTATCTGCGGCGAAGGGCTTTGGACTTTACCTGCGGCGGTGCTTG 2037
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2003 CGGTGGCTTCAGGGCTAATCTGTGGCGAAGGGCTTTGGACTTTACCTGCGGCGGTGCTTG 2062
Query 2038 CACTCGCTGGAGTAAAGCCTCCGATATGTATGAAGTTCTTAGCTTCATAGGATCAGTCAA 2097
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 CCCTCGCCGGAGTAAAACCTCCGATATGTATGAAGTTCTTAGCTTCATAGGATCAGTCAA 2122
Query 2098 AGAGATAAGAAGACTTATGATGTTAGAGTAGTTAGAAGACGTCAAGGTTTATTAAACTCA 2157
|||||||||||||||| ||| ||||||||| |||||||||||||| | | |||||| |||
Sbjct 2123 AGAGATAAGAAGACTTGTGAAGTTAGAGTACTTAGAAGACGTCAATGAT-ATTAAAATCA 2181
Query 2158 TCCTATTCTTAGAATAACAAGAAGAAGACTTCTGAACAAGAACATCTCTTTTTATAGGAA 2217
||||||||||||||||||| | | ||||||||||||||||||||||||| || ||||||
Sbjct 2182 TCCTATTCTTAGAATAACA-G--GTAGACTTCTGAACAAGAACATCTCTTCTTCTAGGAA 2238
Query 2218 TTAAGAGTAAAATCTACTTACATCCGGATGAT-C-T--TC-GTGCTCTG-TTT--T-TGC 2268
|||||| ||||||||||||||||||||||||| | | || || | || ||| | |
Sbjct 2239 TTAAGACTAAAATCTACTTACATCCGGATGATTCATGCTCTGTTTTTTGGTTTGGTATAA 2298
Query 2269 TTTGTCAACACATCTAGATCTGTTGCATTTCCGGTTATCAGCACACTTTTATTGGGT-AT 2327
|||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 2299 TTTGTCAACACATCTAGATCTGTTCCATTTCCGGTTATC-------TTCTATTGGGTTAT 2351
Query 2328 CTCTGAAA-TAGTTATGGGCTTGGCCCATAAATTTAAACAATGGTGAGTTGGTGTAACAA 2386
|||||||| | |||||||||| ||||||||||||||||| | || || | | |||||
Sbjct 2352 CTCTGAAACT-GTTATGGGCTCGGCCCATAAATTTAAACC-T--TG-GT-G-T--AACAA 2402
Query 2387 CATTGTAATAAAACCAGCTATTTAA 2411
| ||||||||| |||||||||||
Sbjct 2403 AAA-GTAATAAAATCAGCTATTTAA 2426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119728299825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5