BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492565
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23010.3 | Symbols: UTR2 | UDP-galactose transporter 2 | chr... 1024 0.0
> AT4G23010.3 | Symbols: UTR2 | UDP-galactose transporter 2 | chr4:12060184-12062858
REVERSE LENGTH=1685
Length=1685
Score = 1024 bits (554), Expect = 0.0
Identities = 660/706 (93%), Gaps = 28/706 (4%)
Strand=Plus/Plus
Query 137 ATAATACCGTTATGAG---TCACTTTACATGTGTTTGATCAATTCCTCTGAATAATTCAC 193
|||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 267 ATAATACCGTTATGAGTCATCACTTTACATGTGTTTGATCAATTACTCT---TAATTCAC 323
Query 194 TTTCTGGG----------T---T-TCT--T-AAAG-AAAG---A-AAAAATGAAGGAGGA 231
|||||||| | | ||| | |||| |||| | |||||||||||||||
Sbjct 324 TTTCTGGGTTTCTTCCTTTGAATCTCTCCTCAAAGAAAAGAAAAGAAAAATGAAGGAGGA 383
Query 232 ACAAACAAGATCTCTGTTTGGAATCTCTTTGTCTGATAAACCAACTTGGCAACAGTTTCT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 ACAAACAAGATCTCTGTTTGGAATCTCTTTGTCTGATAAACCAACTTGGCAACAGTTTCT 443
Query 292 CATTTGCACTTCTGGTTTCTTTTTTGGTTATCTCGTTAACGGAGTCTGCGAGGAATATGT 351
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 444 CATTTGCACTTCTGGTTTCTTTTTTGGTTATCTCGTTAACGGTGTTTGCGAGGAATATGT 503
Query 352 TTATAATCGTCTCCAATTTAGCTTTGGTTGGTATTTCACGTTTATACAAGGATTTGTCTA 411
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 504 TTATAATCGTCTTCAATTTAGCTTTGGGTGGTATTTCACGTTTATACAAGGATTTGTCTA 563
Query 412 CTTGTTTCTAATCTATCTTCAAGGCTTTACCACAAAGCATATCGTTAATCCGATGAGGAC 471
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 564 CTTGTTTCTAATCTACCTTCAAGGCTTTACCACAAAGCATATAGTTAATCCGATGAGAAC 623
Query 472 TTATGTCAAACTCTCTGCTGTTCTCATGGGATCACATGGTTTAACCAAAGGATCTTTGGC 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 624 TTATGTCAAACTCTCTGCTGTTCTCATGGGTTCACATGGTTTAACCAAAGGATCTTTGGC 683
Query 532 TTATCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTGTTGCCGGTGATGAT 591
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 684 TTATCTCAATTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTGTTACCGGTGATGAT 743
Query 592 AATGGGAGCGTTTATACCCGGTCTGAGAAGAAAATACCCAGTCCATGAATACATTTCAGC 651
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 744 AATGGGAGCGTTTATACCCGGTCTTAGAAGAAAATACCCAGTCCATGAATACATTTCAGC 803
Query 652 GTTCTTGCTGGTTCTTGGTTTGATACTATTCACATTAGCCGATGCGCAAATGTCTCCGAA 711
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 804 GTTCTTGCTTGTTCTTGGTTTGATCCTATTCACATTAGCCGATGCGCAAATGTCTCCAAA 863
Query 712 TTTCAGCATGATTGGGATTATGATGATAACCGGTGCATTGATCATGGATGCTTTCTTGGG 771
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTTCAGTATGATTGGGATTATGATGATAACCGGTGCATTGATCATGGATGCTTTCTTGGG 923
Query 772 TAATTTACAAGAAGCTATCTTCACAATGAATCCTGAGACTACTCAG 817
|||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 924 TAATCTGCAAGAAGCTATCTTCACAATGAATCCTGAGACAACTCAG 969
Score = 612 bits (331), Expect = 3e-174
Identities = 391/419 (93%), Gaps = 7/419 (2%)
Strand=Plus/Plus
Query 968 CATCCGTATGTGTATGGAGTGCTTGTATTTGAAGCCATGGCCACATTTATCGGTCAAGTC 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CATCCGTATGTGTATGGAGTGCTTGTATTTGAAGCCATGGCCACATTTATCGGTCAAGTC 1272
Query 1028 TCCGTTCTATCGCTCATTGCCCTCTTTGGAGCCGCCACAACCGCCTTGATAACAACGGCG 1087
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1273 TCCGTTCTCTCGCTTATTGCTCTCTTTGGAGCCGCCACAACTGCCTTGATAACAACGGCT 1332
Query 1088 AGGAAAGGGGTTACGTTGTTGCTATCGTATTTGATATTTACAAAGCCGTTGACGGAACAG 1147
|||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1333 AGGAAAGGGGTTACATTGTTGCTGTCGTATTTGATATTCACAAAGCCGTTAACGGAACAG 1392
Query 1148 CATGGATCAGGCTTGCTGTTGATAGCAATGGGGATTGTATTGAAGATGGTTCCAATGGAT 1207
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 CACGGATCAGGCTTGCTGTTGATAGCAATGGGGATTGTATTGAAGATGGTTCCAATGGAT 1452
Query 1208 AGTAAAGCTCCGACCAAGATTCCAACGAGACCAGCGGTTAGGATTGCAGGAGGGGATGGT 1267
|||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1453 AGTAAAGCTCCGGCCAAGATTCCGGCGAGACCAGCGGTTAGGATCGCAGGAGGCGATGGT 1512
Query 1268 GATAGAGAAGAGGAAGAAGAAAGGAAGTCACTGGTTTGAGAATATAATGTGCCATATATT 1327
|||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||
Sbjct 1513 GATAGAGAAGAGGACGAAGAAAGGAAGTCATTGGTTTGAGAAT-----GTGCCATGTATT 1567
Query 1328 TATATATATTTCATCTAACAAAATTCAAAAGGGTTTATAGAATAATGTTGGGTGAAGGA 1386
||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 1568 TATATATATTTTATCTCACAAA-TTCAAA-GGGTTTATAGAATAATGTTGGATGAAGGA 1624
Score = 183 bits (99), Expect = 3e-45
Identities = 103/105 (98%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 863 CAGATGGAGATGCTTTTCTGCTCAACTGTTGTTGGATTACCGTTCTTGTTCGTTCCCATG 922
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 967 CAGATGGAGATGCTTTTCTGCTCAACAGTTGTTGGATTACCGTTCTTGTTCGTTCCCATG 1026
Query 923 GTCTTAACCGGAGAGGTTTTTCGTGCGTGGACTGCGTGTGCACAA 967
|| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTTTTAACCGGAGAGGTTTTTCGTGCGTGGACTGCGTGTGCACAA 1071
Score = 171 bits (92), Expect = 2e-41
Identities = 126/140 (90%), Gaps = 12/140 (9%)
Strand=Plus/Plus
Query 1 TTCCTTCTTAAAAGctctcttc-t--tcctcctcttttaccaatacatacacatctattt 57
|||||||||||||||||||||| | ||||||||||||||| | || |||||||||
Sbjct 102 TTCCTTCTTAAAAGCTCTCTTCTTCCTCCTCCTCTTTTACC---A-AT--ACATCTATTA 155
Query 58 actctct-ttctctctcttcttcAAGTTTCTCGAGGAGAGTGAAGAATTTGGTTTTAATT 116
||||||| ||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 156 ACTCTCTCTTC-C-CTCTTCATCAAGTTTCTCGAGGAGAGTGAAGAATTTGGTTTTAATT 213
Query 117 ATTCTTTGATTACCCTTTTT 136
||||||||||||||||||||
Sbjct 214 ATTCTTTGATTACCCTTTTT 233
Score = 52.8 bits (28), Expect = 9e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 1396 TCAGAGACTTGTTATTAGATTCTAAAGT-AAA 1426
|||||||||||||||||||||||||||| |||
Sbjct 1650 TCAGAGACTTGTTATTAGATTCTAAAGTGAAA 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5