BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492590
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22780.1 | Symbols: ACR7 | ACT domain repeat 7 | chr4:119682... 2723 0.0
> AT4G22780.1 | Symbols: ACR7 | ACT domain repeat 7 | chr4:11968276-11971149
REVERSE LENGTH=1963
Length=1963
Score = 2723 bits (1474), Expect = 0.0
Identities = 1783/1923 (93%), Gaps = 57/1923 (3%)
Strand=Plus/Plus
Query 1 AGAAGCACATGAATTGTTCTGGTTTTATGA-A-C---ATC-T--gaagaagaaaaag-aa 51
|||||||||||||||||||||||||||||| | | || | ||||||||| ||| ||
Sbjct 49 AGAAGCACATGAATTGTTCTGGTTTTATGATAGCTTTCTCTTAAGAAGAAGAAGAAGAAA 108
Query 52 g---aa--gaaa-gat--ttctgagttttaaggaatattgtttgaaac-a-aag-aag-- 98
| || ||| | | |||||||||||||||| ||||||||||||| | ||| |||
Sbjct 109 GATAAATTAAAAGGGTGGTTCTGAGTTTTAAGGATTATTGTTTGAAACAAGAAGCAAGAA 168
Query 99 caagaagaa--gaagaataaaaaagaTGGAGTTATCTGATTGCTCTAATGAATATGAGAA 156
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 GAAGAAGAATTGAAGAATAAAAAAGATGGAGTTATCTGATTGCTCTAATGAATATGAGAA 228
Query 157 GCTTGTTGTACGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATAC 216
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 GCTCGTTGTTCGGATGAACATGCCCAGGGTCGTAATTGACAATGGAGTTTGCCCTAATTC 288
Query 217 AACTGTCGTCAAGATTGATAGCGCAAGAAGCCCAGGGATATTACTTGAATCTGTACAACT 276
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 289 AACTGTCGTCAAGATTGATAGTGCAAGAAGCCCAGGAATATTGCTTGAATCTGTACAACT 348
Query 277 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TCTCACTGATATGAATCTCTGGATCAAAAAAGCTTACATTTCCTCTGATGGAAAATGGAA 408
Query 337 CATGGATGTTTTTCATGTGAGCGATCTTAACGGAAACAAATTAACCGACGAGAACCTAAT 396
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 TATGGATGTTTTTCATGTGAGCGATCTTAACGGAGACAAATTAACCGACGAGAACCTAAT 468
Query 397 CCGTTACATTGAAAAGTCGATTGAGACGTCTCATTACTGTAAAAAC-GAAGGCTACACCG 455
|||||||||||||||||| ||||| ||||||||||||||| ||||| ||||| || || |
Sbjct 469 CCGTTACATTGAAAAGTCTATTGAAACGTCTCATTACTGT-AAAACGGAAGGGTATACGG 527
Query 456 GTTTAACCGCTTTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 515
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GTTTAACCGCTCTAGAGTTAACCGGAACAGACAGAGTCGGTTTACTCTCAGAGGTTTTCG 587
Query 516 CGGTTTTAGCCGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGTA 575
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 588 CGGTTCTAGCTGATCTTGAATGTGATGTTGTTGAGGCTAAGGCATGGACGCATAACGGCA 647
Query 576 GAATTGCGTCTATGATTTATGTTAAAGACGGTAACTCCGGGACTCCGATCGACGGAGATT 635
| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 648 GGATTGCGTCGATGATTTATGTTAAAGACGGTAACTCCGGGACACCGATCGACGGAGATT 707
Query 636 CTGACCGGGTTCAACGGGTAGAAGGGCAACTACGTAATCTACTTACA-GCCGATGATGGT 694
| ||||| || ||||| |||||||| |||||||| ||||||| || | ||||| ||||||
Sbjct 708 CCGACCGTGTCCAACGTGTAGAAGGACAACTACGAAATCTAC-TAAAGGCCGACGATGGT 766
Query 695 TACCAAAACGACACGAGGACATGTGTTTCCTATGGTGGCAATACTCATATGGAGAGAAGG 754
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 767 TACCAAAACGACACGAGGACATGTGTGTCTTATGGTGGCAATACACATATGGAGAGAAGG 826
Query 755 TTACATCAGAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAATTCT 814
|| || || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 827 TTGCACCAAAGGATGTTTATGGACCGTGACTATGAGAAGAAGTTTGATATCGAGAAATCT 886
Query 815 CCGATTGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAATTTGCAGTGC 874
|| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 887 CCTATCGTTTCGGTACAAAATCTTCCGAAACGTGGTTACTCTGTTGTGAACTTGCAGTGT 946
Query 875 AAAGATCGATTGAAGCTTTTGTTTGACGTTGTTTGCACATTGACGGATATGGCTTACATT 934
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 947 AAAGATCGAATGAAGCTTTTGTTTGACGTTGTTTGCACGTTGACGGATATGGCTTACATT 1006
Query 935 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACCGCGTTTTTGGAATTCTATGTTAGA 994
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1007 GTGTTCCACGCCGCGATTCGAACGGTTGGAGAAACGGCGTTTTTGGAATTCTATGTTAGA 1066
Query 995 CATAGTGATGGACATCCGGTTAGTTCGGAACCGGAGAGACAACGTTTGATCCAGTGTTTA 1054
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1067 CATAGTGATGGACATCCGGTTAGTTCAGAACCGGAGAGACAACGTTTGATCCAATGTTTA 1126
Query 1055 CAAGCCGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACGGCGGAT 1114
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1127 CAAGCTGCAATTGAAAGAAGAACGGTTAAGGGTGTGAGATTGGAGTTATGCACAGCGGAT 1186
Query 1115 AGACCGGGATTGTTAGCGGAAGTAACACGAGTGTTGAGGGAGAACGGATTAAACATTGCT 1174
|||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||
Sbjct 1187 AGACCGGGATTGTTAGCGGAAGTAACACGAATATTGAGGGAGAACGGTTTAAACATTGCT 1246
Query 1175 AGAGCCGAGATATCGACTAAAGATGGTGTAGCGAGGAATGTGTTCTATGTGACTGATGCA 1234
|||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 1247 AGAGCCGAGATATCGACTAAAGATAGTATAGCGAGGAATGTGTTCTATGTGACGGATGCA 1306
Query 1235 AATGGTAA-CTTAATAGATCCTGAGATAATCCAATCGATTAGGGAGAAGATTGGTATCGA 1293
|||||||| ||| |||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 1307 AATGGTAACCTT-ATAGATCCCGAGATAATCAAATCGATTAGGGAGAAGATCGGTATCGA 1365
Query 1294 TGATCTAAGTGTTAAAGAACTGTTCCCGACTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1353
|||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1366 TGATCTCAGTGTTAAAGAACCGTTCCCGATTAGTTGCCGAGAAGCGGTTGAGAAGGAACA 1425
Query 1354 ACATCA-AGAACCGCAAGATCACCAAGGACGCTATGGAGGAGGGACAGTATTGGTATCAC 1412
|||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1426 ACAT-ATAGAACCGCAAGATCACCAAGGACGGTATGGAGGAGGGACAGTGTTGGTGTCAC 1484
Query 1413 TTGGGAGTCTAGTGATGAGAAATCTATATCAATTGGGTTTGATCAAATCATATTTTTAAC 1472
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1485 TTGGGAGTCTAGTGATGAGGAATCTATACCATTTGGGTTTGATCAAATCATATTTTTAAC 1544
Query 1473 C-GGGTAAACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1531
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CGGGGT-AACTAACCGGTCCATGTAGACCAATTCAATCGTGTTTGTCAACAACCCACGCG 1603
Query 1532 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTAATGGATTTGGTTTGGGGGAAAA 1591
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 1604 GTTGAATTGGTGTATCTGGAGCAGATAGTGAACCGGTTATGGATTTGGTTTGTGGGCAAA 1663
Query 1592 TTTAATTA-ATGTATATAAAATGTGGAAAGTTAGTTAAGAATTTGGTGGTCGGTCTT-CA 1649
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1664 TTTAATTTTATGTATATAAAATGTGGGAAGTTAGTTAAGAATTTGGTGGTCGGTCTTTCA 1723
Query 1650 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAAAATCTTGGTAACATTTAttttttt 1709
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1724 TGTTGGACCAATAGGTAGTAGAAGGATGTTAGGTAGAATCTTGGTAACATTTATTTTTTT 1783
Query 1710 ATTATCTGTACATATTTATGATATAACCTATGGTTGTTAGAAGATTAGTTTTGTTAATAG 1769
| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1784 CT---CTGTACATATTTATGATATAACCTATCGTTGTTAGAAGATTAGTTTTGTCAATAG 1840
Query 1770 TAGTAAATCAGTGTGTT--ATGTAAA-TTA--T--------GGGGTCAGTGTTACGCAAA 1816
|| || |||||||||| ||||||| ||| | ||||| ||||| |||||||
Sbjct 1841 TA--AA-TCAGTGTGTTGTATGTAAAATTAAATTAAATTATGGGGTTAGTGTAACGCAAA 1897
Query 1817 GGAGACAAGCGGGTCCTACTTGTGTGAATCTTATTGATTCGTTTTTGTT-TTATATAATC 1875
||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1898 GGAGACAAGTGGGTCCTACATGTGTGAATCTTATTGATTCGTTTTT-TTATTATATAATC 1956
Query 1876 TTT 1878
|||
Sbjct 1957 TTT 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5