BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492611

Length=1525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G22580.1 | Symbols:  | Exostosin family protein | chr4:11889...  2182    0.0  


> AT4G22580.1 | Symbols:  | Exostosin family protein | chr4:11889098-11890725 
REVERSE LENGTH=1628
Length=1628

 Score = 2182 bits (1181),  Expect = 0.0
 Identities = 1381/1474 (94%), Gaps = 28/1474 (2%)
 Strand=Plus/Plus

Query  1     AAACTACCACTCTCACTCCGACAACCTCCATAACAATGGCTTTCAAATCCACCGTCACAA  60
             ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct  2     AAACTACCACTCTCACTCCGACAACATCCATAACAATGGCTTCCAAATCCACCGTCACAA  61

Query  61    CATTGACCA---------tcttcttcttcttcttcGTCGAGCCTAGGGTTGTTTCACAGC  111
             |||||||||         ||||||||||||||||| ||||||||| ||||   || ||||
Sbjct  62    CATTGACCATCTTCTTCTTCTTCTTCTTCTTCTTCATCGAGCCTAAGGTTCAGTCTCAGC  121

Query  112   AAATCTCAGCCGTCGATTCAGAATGCACCAACCGTTGGATCCACATCCGTACACTCCCAT  171
             ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  122   AAATCTCAGCCGTTGATTCAGAATGCACCAACCGTTGGATTCACATCCGAACACTCCCAT  181

Query  172   CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT  231
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  182   CACGATTCAATCTCGATCTTCTCTCAACTTGTAATCGTTACCCAATCACCGACGATCTTT  241

Query  232   GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACTCGAAGCTGGT  291
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  242   GCCCTTACTTAGCCAATCACGGACTCGGCCCAAAAACCCATACCCGTACCCGAAGCTGGT  301

Query  292   ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT  351
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302   ATCGAACCGACCCGTTACTTCTCGAACTCATTTTCCACCGTCGGATTCTCGAATATCCAT  361

Query  352   GTCTCACACCCGACCCGGATCTAGCCTCCGCCGTTTATCTCCCTTACTACGCCGGTATCG  411
             ||||||||||||||||| |||| ||||||||  | || ||||||||||||||||| ||||
Sbjct  362   GTCTCACACCCGACCCGAATCTCGCCTCCGCAATCTACCTCCCTTACTACGCCGGCATCG  421

Query  412   ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC  471
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422   ATTCTCTCCGTTATCTCTACGGACCCGATTTAAACTCAAGCGCTGATCACGGGTCGGATC  481

Query  472   TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC  531
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  482   TTCTCGAGTTTTTGACCCGTGATCAACCCGAGATCTGGTCTCGTCGCTCCGGTCATGATC  541

Query  532   ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC  591
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  542   ATTTCCTCGTTATGGCTCGACCCGCTTGGGATTTCTCTCAGCCGTTGACCGTTGACCCTC  601

Query  592   CGATTTGGGGCACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC  651
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  602   CGATTTGGGGAACGTCGTTTCTAGAACGCCGTGAGTTTTTCAATCTAACGGCGTTAACTC  661

Query  652   TCGAATCTCGTTTCTGGCCGTGGCAAGAACAAGCCGTCCCTTATCCGACGTCGTTTCACC  711
             |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  662   TCGAATCTCGTTACTGGCCGTGGCAAGAACAAGCCGTTCCTTATCCGACGTCGTTTCATC  721

Query  712   CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT  771
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  722   CACACAGCTTGCCGTTTTTGGAATCGTGGATCCGTCGTGTCCGTCGCTCACGGCGAACTT  781

Query  772   CTCTTATGCTATTCGCCGGCGGCGGAGGTACCTCCTCTTCTCCGAACATCCGTCGTAGTA  831
             |||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct  782   CTCTTATGCTATTCGCCGGCGGTGGTGGTACCTCCTCTTCTCCTAACATCCGTCGTAGTA  841

Query  832   TCCGATTAGAGTGTACAAACGTAAACGCCAC-CGAATCGGAATTGAAATCGGATAAAATC  890
             |||| |||||||| || | | ||||||| || | ||||||| |  || |   | ||| ||
Sbjct  842   TCCGCTTAGAGTGCACTAGCATAAACGCAACAC-AATCGGA-T--AA-T---A-AAA-TC  891

Query  891   TGCGATTTTGTTGATTGCTCTAATGGAATCTGTGAGCATGATCCGCTTAGATTCATGAGA  950
             |||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct  892   TGCGATTTCGTCGATTGTTCTAACGGAATCTGTGAGCATGATCCGATTAGATTCATGAGA  951

Query  951   CCAATGTTACAATCATCGTTTTGCTTACAACCACCAGGAGATACACCAACACGTAAAGCT  1010
             || |||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct  952   CCGATGTTACAATCATCGTTTTGTTTACAACCACCGGGAGATACACCAACAAGGAAAGCT  1011

Query  1011  ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAAGACCAAACGGCGAAA  1070
             |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  1012  ACATTCGACGGAATCATCGCCGGATGTATACCGGTGTTTTTCGAGGATCAAACGGCGAAA  1071

Query  1071  ATGCAGTACAAATGGCATTTACCGGAATCCGAATTCGCGCAGTTTTCGGTTACGATTCCG  1130
             |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct  1072  ATGCAGTACAAATGGCATTTACCGGAGTCCGAATTCGCGGAGTTTTCGGTTACGATTCCG  1131

Query  1131  AAAGAAGATGTTGTATTTAGAGGAGTTAGAATCCAAGATGTGTTGATGAGTATACCTAAA  1190
             || |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1132  AAGGAAGATGTAGTGTTTAGAGGAGTTAGAATACAAGATGTGTTGATGAGTATACCTAAA  1191

Query  1191  GAAGAAGTTACGAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA  1250
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1192  GAAGAAGTTACTAGAATGAGAGAAAGAGTTATAGAGATGATGCCTAGAGTTATGTATAGA  1251

Query  1251  AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCCATTGAT  1310
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1252  AGACATGGAGCTTCAATGGGATTGATGAATAAGAAAGATGCTGTTGATATTGCTATTGAT  1311

Query  1311  GGAGTTTTGGACAAGATTAAATCTAGAGTTTGATGATTAGTAACATCACTTATAAACAGG  1370
             ||||||||||||| ||||| ||||||||||||||  ||| ||||| || || ||||||||
Sbjct  1312  GGAGTTTTGGACAGGATTATATCTAGAGTTTGATTCTTACTAACAACAGTTTTAAACAGG  1371

Query  1371  TATGTATAATGTTGTTGTTTGTTTAG-TTATTTATACTTAAAAATTC-TTTTTGATTGTT  1428
             ||||||| |||||||||||||||||  || || |||||| ||||||| ||||||||||||
Sbjct  1372  TATGTATTATGTTGTTGTTTGTTTAAATTGTT-ATACTTCAAAATTCATTTTTGATTGTT  1430

Query  1429  --TGTTGGATGCAAAATCTCATTGAGATTTTTTG  1460
               ||||   ||| |||||||||||||||||||||
Sbjct  1431  CATGTT---TGCCAAATCTCATTGAGATTTTTTG  1461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75250616955


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5