BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492634
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22330.1 | Symbols: ATCES1 | Alkaline phytoceramidase (aPHC)... 1864 0.0
> AT4G22330.1 | Symbols: ATCES1 | Alkaline phytoceramidase (aPHC)
| chr4:11797567-11799856 FORWARD LENGTH=1347
Length=1347
Score = 1864 bits (1009), Expect = 0.0
Identities = 1198/1283 (93%), Gaps = 38/1283 (3%)
Strand=Plus/Plus
Query 1 AAAAGGCCCAagagagagagagagaagacgaaacgatcgtc--------agagagagaAA 52
|||||| || | ||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2 AAAAGGACC-A-AGAGAGAGA-AGAAGACGAAACGATCGTCAGAGATAGAGAGAGAGAAA 58
Query 53 GGTC-TCATCCATTATTACTCGCAGAAGATTTGTTCTCATCTGATTCCTCCGATCTGCCA 111
|||| ||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 59 GGTCATCACCCATTCTCACTCGCAGAATATTTGTTCTCATCTGATTCCTCCGATCTGCCA 118
Query 112 TGGCTCTGCTTCGCTAACACTAAGAAGATTCACACACGCGGTGAA-G-GAGGGAGG-A-G 167
|| ||| |||| ||||| |||||||| |||||| |||||| ||| | |||||||| | |
Sbjct 119 TGTCTCGGCTTTTCTAACGCTAAGAAGTTTCACAGACGCGGCGAAGGAGAGGGAGGAAGG 178
Query 168 -GATCGATCTCTTTTTCCGTCGCGAGaaaaaaaaaaaaTAAACGTGTCTAGAGGCT-TTC 225
||| |||||||||||||||||||| || || |||||||||||||||||||||||| ||
Sbjct 179 AGATAGATCTCTTTTTCCGTCGCGATAATAATAAAAAATAAACGTGTCTAGAGGCTGTT- 237
Query 226 ACT-AAGGAGTTGATTCATACTGAGAGAAGATAGAAATGGCAGATGGGATATCGAGCTTT 284
||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 238 ACTGAA-GAGTTGATTCATACGGAGAGAGGATAGAAATGGCAGATGGGATATCGAGCTTT 296
Query 285 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATAAACTACGCCTACTCATCCTAC 344
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 297 TGGGGTCCTGTGACTTCTACTATAGAGTGTTGTGAGATGAACTACGCCTACTCATCCTAC 356
Query 345 ATTGCAGAGTTTTATAACACTATCTCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 404
||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 ATTGCTGAGTTCTACAACACTATATCCAATGTCCCTGGAATCCTATTGGCTCTCATTGGT 416
Query 405 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATATCGAAT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 CTTGTCAATGCATTAAGGCAACGGTTTGAGAAGAGGTTTAGCATTCTTCACATTTCGAAT 476
Query 465 ATGATTCTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 524
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ATGATACTTGCTATCGGCAGCATGCTCTACCATGCCACTTTGCAACACGTGCAACAACAG 536
Query 525 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTTTACATGTACATCCTTTACTCACCA 584
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 AGTGATGAGACCCCAATGGTGTGGGAGATACTTCTATACATGTACATCCTTTACTCACCA 596
Query 585 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTATGGTGCTGCCTTTGCC 644
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GATTGGCATTACCGAAGTACAATGCCCACTTTTCTCTTCCTCTACGGTGCTGCCTTTGCC 656
Query 645 ATAGTCCATGCTTACCTCAGGTTTGGCATTGGTTTCAAGGTCCACTACGTGATCCTTTGC 704
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 657 ATAGTCCATGCTTACCTCAGGTTTGGAATTGGTTTCAAGGTCCACTACGTGATACTTTGC 716
Query 705 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACCGCAGCCAAA 764
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 CTTCTATGCATCCCTCGGATGTACAAGTACTACATTCACACAGAGGACACAGCAGCCAAA 776
Query 765 AGGATTGCAAAATGGTATGTTGCTACAATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 824
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 AGGATTGCGAAATGGTATGTTGCTACGATCTTAGTGGGAAGCATATGCTGGTTCTGTGAC 836
Query 825 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGCCATGCTCTGTGG 884
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 837 CGTGTCTTCTGCAAGACGATATCTCAGTGGCCTGTGAATCCTCAGGGACATGCTCTGTGG 896
Query 885 CATGTGTTCATGAGTTTCAACTCTTACTGTGCAAACACATTCTTGATGTTCTGCCGAGCT 944
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 897 CATGTGTTCATGAGTTTCAACTCTTACTGCGCAAACACATTCTTGATGTTCTGCAGAGCT 956
Query 945 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTTCCTTATGTCAAG 1004
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 CAGCAACGTGGATGGAACCCAAAGGTAAAATACTTTCTGGGAGTTCTCCCTTATGTCAAG 1016
Query 1005 ATCGagaagccaaaaacacagtgagaagaaaat-ggggataaaaa-gcccagaagaaaga 1062
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||| ||
Sbjct 1017 ATCGAGAAGCCAAAAACACAATGAGAAGAAAATTGGGGATAAAAAAGCCCAGATGAA-GA 1075
Query 1063 agaagaagaTCATAAATATAGTTTTTGTTCAACGTTTTGTCAGAATCTCGACATGGGttt 1122
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1076 AGAAGAAGATCATAAATATAGTTTTTGTTCATCGTTTTGTCAGAATCTCGACATGGTTTT 1135
Query 1123 ttt---a-ttttattttttGGAAGTGAAACTCTCTAGATACAGTCTAGATCttttttttt 1178
||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1136 TTTCTTAATTTTATTTTTTGAAAGTGAAACTCTCTAGATACAGTCTAGATTTTTTTTTTT 1195
Query 1179 cttt-t--tCTCTGTATTAGTTATTGGGATTTGCTCTTAAGAAGAATTGAGATTGATTTT 1235
||| | |||||||||||| |||||||| | |||||||||||||||||| || |||
Sbjct 1196 TTTTCTCATCTCTGTATTAGCTATTGGGAAT-GCTCTTAAGAAGAATTGA--TT--TTT- 1249
Query 1236 TAACTTGCTAAAGAAGCTCTTGT 1258
||||||||||| ||||||||||
Sbjct 1250 -AACTTGCTAAAAAAGCTCTTGT 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5